miRTarBase update 2022: an informative resource for experimentally validated miRNA–target interactions HY Huang, YCD Lin, S Cui, Y Huang, Y Tang, J Xu, J Bao, Y Li, J Wen, ... Nucleic acids research 50 (D1), D222-D230, 2022 | 431 | 2022 |
MethHC 2.0: information repository of DNA methylation and gene expression in human cancer HY Huang, J Li, Y Tang, YX Huang, YG Chen, YY Xie, ZY Zhou, XY Chen, ... Nucleic acids research 49 (D1), D1268-D1275, 2021 | 30 | 2021 |
Accelerating the discovery of anticancer peptides through deep forest architecture with deep graphical representation L Yao, W Li, Y Zhang, J Deng, Y Pang, Y Huang, CR Chung, J Yu, ... International Journal of Molecular Sciences 24 (5), 4328, 2023 | 13 | 2023 |
Paraburkholderia phosphatilytica sp. nov., a phosphate-solubilizing bacterium isolated from forest soil Z Gao, S Ruan, Y Huang, Y Lv, L Qiu International Journal of Systematic and Evolutionary Microbiology 69 (1 …, 2019 | 12 | 2019 |
Dyella halodurans sp. nov., isolated from lower subtropical forest soil Y Cai, Z Gao, M Chen, Y Huang, L Qiu International Journal of Systematic and Evolutionary Microbiology 68 (10 …, 2018 | 8 | 2018 |
A robust drug–target interaction prediction framework with capsule network and transfer learning Y Huang, HY Huang, Y Chen, YCD Lin, L Yao, T Lin, J Leng, Y Chang, ... International Journal of Molecular Sciences 24 (18), 14061, 2023 | 4 | 2023 |
Mechanism of Sophorae Flavescentis Radix (Kushen) in treating NSCLC: Insights from miRNA-mRNA network analysis J Li, Y Huang, J Xu, H Zuo, Y Tang, HY Huang, J Chen, HD Huang Journal of Ethnopharmacology 319, 117232, 2024 | 1 | 2024 |
CapsEnhancer: An Effective Computational Framework for Identifying Enhancers Based on Chaos Game Representation and Capsule Network L Yao, P Xie, J Guan, CR Chung, Y Huang, Y Pang, H Wu, YC Chiang, ... Journal of Chemical Information and Modeling, 2024 | | 2024 |
AMPActiPred: A three‐stage framework for predicting antibacterial peptides and activity levels with deep forest L Yao, J Guan, P Xie, CR Chung, J Deng, Y Huang, YC Chiang, TY Lee Protein Science 33 (6), e5006, 2024 | | 2024 |
A Causal Regulation Modeling Algorithm for Temporal Events with Application to Escherichia coli’s Aerobic to Anaerobic Transition Y Chen, R Mao, J Xu, Y Huang, J Xu, S Cui, Z Zhu, X Ji, S Huang, ... International Journal of Molecular Sciences 25 (11), 5654, 2024 | | 2024 |
A two-stage computational framework for identifying antiviral peptides and their functional types based on contrastive learning and multi-feature fusion strategy J Guan, L Yao, P Xie, CR Chung, Y Huang, YC Chiang, TY Lee Briefings in Bioinformatics 25 (3), bbae208, 2024 | | 2024 |
KinPred-RNA—kinase activity inference and cancer type classification using machine learning on RNA-seq data Y Zhang, L Yao, CR Chung, Y Huang, S Li, W Zhang, Y Pang, TY Lee Iscience 27 (4), 2024 | | 2024 |