| Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3 F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ... | 1133 | 2020 |
| Probiotics, gut microbiota, and their influence on host health and disease B Sánchez, S Delgado, A Blanco‐Míguez, A Lourenço, M Gueimonde, ... Molecular nutrition & food research 61 (1), 1600240, 2017 | 1072 | 2017 |
| Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4 A Blanco-Míguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ... Nature Biotechnology 41 (11), 1633-1644, 2023 | 307 | 2023 |
| Intestinal Akkermansia muciniphila predicts clinical response to PD-1 blockade in patients with advanced non-small-cell lung cancer L Derosa, B Routy, AM Thomas, V Iebba, G Zalcman, S Friard, J Mazieres, ... Nature Medicine 28 (2), 315-324, 2022 | 299 | 2022 |
| Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma KA Lee, AM Thomas, LA Bolte, JR Björk, LK de Ruijter, F Armanini, ... Nature Medicine 28 (3), 535-544, 2022 | 219 | 2022 |
| The person-to-person transmission landscape of the gut and oral microbiomes M Valles-Colomer, A Blanco-Míguez, P Manghi, F Asnicar, L Dubois, ... Nature 614 (7946), 125-135, 2023 | 179 | 2023 |
| Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases G Ianiro, M Punčochář, N Karcher, S Porcari, F Armanini, F Asnicar, ... Nature Medicine, 1-11, 2022 | 130 | 2022 |
| Faecal microbiota transplantation for the treatment of diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal cell carcinoma G Ianiro, E Rossi, AM Thomas, G Schinzari, L Masucci, G Quaranta, ... Nature Communications 11 (1), 1-6, 2020 | 103 | 2020 |
| Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly N Karcher, E Nigro, M Punčochář, A Blanco-Míguez, M Ciciani, P Manghi, ... Genome Biology 22 (1), 209, 2021 | 91 | 2021 |
| From amino acid sequence to bioactivity: The biomedical potential of antitumor peptides A Blanco‐Míguez, A Gutiérrez‐Jácome, M Pérez‐Pérez, ... Protein Science 25 (6), 1084-1095, 2016 | 67 | 2016 |
| Tackling probiotic and gut microbiota functionality through proteomics L Ruiz, C Hidalgo, A Blanco-Míguez, A Lourenço, B Sánchez, A Margolles Journal of proteomics 147, 28-39, 2016 | 50 | 2016 |
| MAHMI database: a comprehensive MetaHit-based resource for the study of the mechanism of action of the human microbiota A Blanco-Míguez, A Gutiérrez-Jácome, F Fdez-Riverola, A Lourenco, ... Database 2017, 2017 | 41 | 2017 |
| Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period F Maixner, MS Sarhan, KD Huang, A Tett, A Schoenafinger, S Zingale, ... Current Biology 31 (23), 5149-5162. e6, 2021 | 30 | 2021 |
| A distinct Fusobacterium nucleatum clade dominates the colorectal cancer niche M Zepeda-Rivera, SS Minot, H Bouzek, H Wu, A Blanco-Míguez, ... Nature 628 (8007), 424-432, 2024 | 27 | 2024 |
| BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results A Blanco-Míguez, F Fdez-Riverola, B Sánchez, A Lourenço PloS one 13 (10), e0205286, 2018 | 24 | 2018 |
| In silico screening of the human gut metaproteome identifies Th17-promoting peptides encrypted in proteins of commensal bacteria C Hidalgo-Cantabrana, MA Moro-García, A Blanco-Míguez, ... Frontiers in microbiology 8, 1726, 2017 | 24 | 2017 |
| Commensal Bifidobacterium Strains Enhance the Efficacy of Neo-Epitope Based Cancer Vaccines M Tomasi, M Dalsass, F Beghini, I Zanella, E Caproni, L Fantappiè, ... Vaccines 9 (11), 1356, 2021 | 17 | 2021 |
| Resources and tools for the high-throughput, multi-omic study of intestinal microbiota A Blanco-Míguez, F Fdez-Riverola, B Sánchez, A Lourenço Briefings in Bioinformatics 20 (3), 1032-1056, 2019 | 16 | 2019 |
| The biocreative v. 5 evaluation workshop: tasks, organization, sessions and topics M Krallinger, M Pérez-Pérez, G Pérez-Rodríguez, A Blanco-Míguez, ... | 16 | 2017 |
| Benchmarking biomedical text mining web servers at BioCreative V. 5: the technical interoperability and performance of annotation servers–TIPS track M Pérez-Pérez, G Pérez-Rodríguez, A Blanco-Míguez, F Fdez-Riverola, ... Proceedings of the BioCreative 5, 12-21, 2017 | 15 | 2017 |
