The design and construction of reference pangenome graphs with minigraph H Li, X Feng, C Chu Genome biology 21, 1-19, 2020 | 280 | 2020 |
The global burden of disease attributable to ambient fine particulate matter in 204 countries and territories, 1990–2019: A systematic analysis of the Global Burden of Disease … S Sang, C Chu, T Zhang, H Chen, X Yang Ecotoxicology and environmental safety 238, 113588, 2022 | 103 | 2022 |
Global burden of lung cancer attributable to ambient fine particulate matter pollution in 204 countries and territories, 1990–2019 X Yang, T Zhang, X Zhang, C Chu, S Sang Environmental research 204, 112023, 2022 | 74 | 2022 |
An optimized long short-term memory network based fault diagnosis model for chemical processes Y Han, N Ding, Z Geng, Z Wang, C Chu Journal of Process Control 92, 161-168, 2020 | 74 | 2020 |
HiNT: a computational method for detecting copy number variations and translocations from Hi-C data S Wang, S Lee, C Chu, D Jain, P Kerpedjiev, GM Nelson, JM Walsh, ... Genome biology 21, 1-15, 2020 | 69 | 2020 |
Genomic takeover by transposable elements in the strawberry poison frog RL Rogers, L Zhou, C Chu, R Márquez, A Corl, T Linderoth, L Freeborn, ... Molecular Biology and Evolution 35 (12), 2913-2927, 2018 | 67 | 2018 |
Comprehensive identification of transposable element insertions using multiple sequencing technologies C Chu, R Borges-Monroy, VV Viswanadham, S Lee, H Li, EA Lee, PJ Park Nature communications 12 (1), 3836, 2021 | 65 | 2021 |
REPdenovo: Inferring De Novo Repeat Motifs from Short Sequence Reads C Chu, R Nielsen, Y Wu PloS one 11 (3), e0150719, 2016 | 61 | 2016 |
A draft genome sequence of the elusive giant squid, Architeuthis dux RR da Fonseca, A Couto, AM Machado, B Brejova, CB Albertin, F Silva, ... GigaScience 9 (1), giz152, 2020 | 44 | 2020 |
Analysis of somatic mutations in 131 human brains reveals aging-associated hypermutability T Bae, L Fasching, Y Wang, JH Shin, M Suvakov, Y Jang, S Norton, ... Science 377 (6605), 511-517, 2022 | 36 | 2022 |
Reverse transcriptase inhibition disrupts repeat element life cycle in colorectal cancer M Rajurkar, AR Parikh, A Solovyov, E You, AS Kulkarni, C Chu, KH Xu, ... Cancer discovery 12 (6), 1462-1481, 2022 | 35 | 2022 |
CircMarker: a fast and accurate algorithm for circular RNA detection X Li, C Chu, J Pei, I Măndoiu, Y Wu BMC genomics 19, 79-87, 2018 | 34 | 2018 |
ERα-associated translocations underlie oncogene amplifications in breast cancer JJK Lee, YL Jung, TC Cheong, J Espejo Valle-Inclan, C Chu, DC Gulhan, ... Nature 618 (7967), 1024-1032, 2023 | 32 | 2023 |
Somatic mosaicism reveals clonal distributions of neocortical development MW Breuss, X Yang, JCM Schlachetzki, D Antaki, AJ Lana, X Xu, ... Nature 604 (7907), 689-696, 2022 | 30 | 2022 |
GINDEL: accurate genotype calling of insertions and deletions from low coverage population sequence reads C Chu, J Zhang, Y Wu PloS one 9 (11), e113324, 2014 | 24 | 2014 |
Whole-genome analysis reveals the contribution of non-coding de novo transposon insertions to autism spectrum disorder R Borges-Monroy, C Chu, C Dias, J Choi, S Lee, Y Gao, T Shin, PJ Park, ... Mobile DNA 12, 1-15, 2021 | 23 | 2021 |
CLADES: A classification‐based machine learning method for species delimitation from population genetic data J Pei, C Chu, X Li, B Lu, Y Wu Molecular ecology resources 18 (5), 1144-1156, 2018 | 23 | 2018 |
GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads C Chu, X Li, Y Wu BMC genomics 20, 1-10, 2019 | 21 | 2019 |
Identification and genotyping of transposable element insertions from genome sequencing data C Chu, B Zhao, PJ Park, EA Lee Current protocols in human genetics 107 (1), e102, 2020 | 14 | 2020 |
Deciphering transcriptome alterations in bone marrow hematopoiesis at single-cell resolution in immune thrombocytopenia Y Liu, X Zuo, P Chen, X Hu, Z Sheng, A Liu, Q Liu, S Leng, X Zhang, X Li, ... Signal Transduction and Targeted Therapy 7 (1), 347, 2022 | 12 | 2022 |