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Ashok A. Deniz
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Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism
T Ha, AY Ting, J Liang, WB Caldwell, AA Deniz, DS Chemla, PG Schultz, ...
Proceedings of the National Academy of Sciences 96 (3), 893-898, 1999
7191999
Single-pair fluorescence resonance energy transfer on freely diffusing molecules: observation of Förster distance dependence and subpopulations
AA Deniz, M Dahan, JR Grunwell, T Ha, AE Faulhaber, DS Chemla, ...
Proceedings of the National Academy of Sciences 96 (7), 3670-3675, 1999
6941999
Single-molecule protein folding: diffusion fluorescence resonance energy transfer studies of the denaturation of chymotrypsin inhibitor 2
AA Deniz, TA Laurence, GS Beligere, M Dahan, AB Martin, DS Chemla, ...
Proceedings of the National Academy of Sciences 97 (10), 5179-5184, 2000
5842000
Interplay of α-synuclein binding and conformational switching probed by single-molecule fluorescence
ACM Ferreon, Y Gambin, EA Lemke, AA Deniz
Proceedings of the National Academy of Sciences 106 (14), 5645-5650, 2009
4512009
Nucleophosmin integrates within the nucleolus via multi-modal interactions with proteins displaying R-rich linear motifs and rRNA
DM Mitrea, JA Cika, CS Guy, D Ban, PR Banerjee, CB Stanley, A Nourse, ...
elife 5, e13571, 2016
4402016
Single-molecule biophysics: at the interface of biology, physics and chemistry
AA Deniz, S Mukhopadhyay, EA Lemke
Journal of the Royal Society Interface 5 (18), 15-45, 2008
3902008
Reentrant phase transition drives dynamic substructure formation in ribonucleoprotein droplets
PR Banerjee, AN Milin, MM Moosa, PL Onuchic, AA Deniz
Angewandte Chemie 129 (38), 11512-11517, 2017
3622017
Modulation of allostery by protein intrinsic disorder
ACM Ferreon, JC Ferreon, PE Wright, AA Deniz
Nature 498 (7454), 390-394, 2013
3552013
A natively unfolded yeast prion monomer adopts an ensemble of collapsed and rapidly fluctuating structures
S Mukhopadhyay, R Krishnan, EA Lemke, S Lindquist, AA Deniz
Proceedings of the National Academy of Sciences 104 (8), 2649-2654, 2007
3542007
Self-interaction of NPM1 modulates multiple mechanisms of liquid–liquid phase separation
DM Mitrea, JA Cika, CB Stanley, A Nourse, PL Onuchic, PR Banerjee, ...
Nature communications 9 (1), 842, 2018
3312018
Ratiometric single-molecule studies of freely diffusing biomolecules
AA Deniz, TA Laurence, M Dahan, DS Chemla, PG Schultz, S Weiss
Annual review of physical chemistry 52 (1), 233-253, 2001
2652001
A general and efficient method for the site-specific dual-labeling of proteins for single molecule fluorescence resonance energy transfer
EM Brustad, EA Lemke, PG Schultz, AA Deniz
Journal of the American Chemical Society 130 (52), 17664-17665, 2008
2362008
Ratiometric measurement and identification of single diffusing molecules
M Dahan, AA Deniz, T Ha, DS Chemla, PG Schultz, S Weiss
Chemical Physics 247 (1), 85-106, 1999
1961999
FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices
E Lerner, A Barth, J Hendrix, B Ambrose, V Birkedal, SC Blanchard, ...
Elife 10, e60416, 2021
1942021
Monitoring the conformational fluctuations of DNA hairpins using single-pair fluorescence resonance energy transfer
JR Grunwell, JL Glass, TD Lacoste, AA Deniz, DS Chemla, PG Schultz
Journal of the American Chemical Society 123 (18), 4295-4303, 2001
1732001
Unnatural amino acid mutagenesis of green fluorescent protein
L Wang, J Xie, AA Deniz, PG Schultz
The Journal of organic chemistry 68 (1), 174-176, 2003
1572003
Visualizing a one-way protein encounter complex by ultrafast single-molecule mixing
Y Gambin, V VanDelinder, ACM Ferreon, EA Lemke, A Groisman, ...
Nature methods 8 (3), 239-241, 2011
1492011
Conserved features of intermediates in amyloid assembly determine their benign or toxic states
R Krishnan, JL Goodman, S Mukhopadhyay, CD Pacheco, EA Lemke, ...
Proceedings of the National Academy of Sciences 109 (28), 11172-11177, 2012
1382012
Three‐color single‐molecule fluorescence resonance energy transfer
JP Clamme, AA Deniz
ChemPhysChem 6 (1), 74-77, 2005
1352005
Single-molecule fluorescence studies of intrinsically disordered proteins
ACM Ferreon, CR Moran, Y Gambin, AA Deniz
Methods in enzymology 472, 179-204, 2010
1332010
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