Evaluating DNA methylation, gene expression, somatic mutation, and their combinations in inferring tumor tissue-of-origin H Liu, C Qiu, B Wang, P Bing, G Tian, X Zhang, J Ma, B He, J Yang Frontiers in cell and developmental biology 9, 619330, 2021 | 96 | 2021 |
A new genome-scale metabolic model of Corynebacterium glutamicum and its application Y Zhang, J Cai, X Shang, B Wang, S Liu, X Chai, T Tan, Y Zhang, T Wen Biotechnology for biofuels 10, 1-16, 2017 | 86 | 2017 |
TOOme: a novel computational framework to infer cancer tissue-of-origin by integrating both gene mutation and expression B He, J Lang, B Wang, X Liu, Q Lu, J He, W Gao, P Bing, G Tian, J Yang Frontiers in bioengineering and biotechnology 8, 394, 2020 | 83 | 2020 |
A RecET-assisted CRISPR–Cas9 genome editing in Corynebacterium glutamicum B Wang, Q Hu, Y Zhang, R Shi, X Chai, Z Liu, X Shang, Y Zhang, T Wen Microbial Cell Factories 17, 1-16, 2018 | 78 | 2018 |
A machine learning framework to trace tumor tissue-of-origin of 13 types of cancer based on DNA somatic mutation B He, C Dai, J Lang, P Bing, G Tian, B Wang, J Yang Biochimica et Biophysica Acta (BBA)-Molecular Basis of Disease 1866 (11), 165916, 2020 | 68 | 2020 |
A neural network framework for predicting the tissue-of-origin of 15 common cancer types based on RNA-Seq data B He, Y Zhang, Z Zhou, B Wang, Y Liang, J Lang, H Lin, P Bing, L Yu, ... Frontiers in bioengineering and biotechnology 8, 737, 2020 | 53 | 2020 |
Reconstruction of tricarboxylic acid cycle in Corynebacterium glutamicum with a genome‐scale metabolic network model for trans‐4‐hydroxyproline production Y Zhang, Y Zhang, X Shang, B Wang, Q Hu, S Liu, T Wen Biotechnology and bioengineering 116 (1), 99-109, 2019 | 27 | 2019 |
A novel XGBoost method to identify cancer tissue-of-origin based on copy number variations Y Zhang, T Feng, S Wang, R Dong, J Yang, J Su, B Wang Frontiers in genetics 11, 585029, 2020 | 25 | 2020 |
A deep learning framework to predict tumor tissue-of-origin based on copy number alteration Y Liang, H Wang, J Yang, X Li, C Dai, P Shao, G Tian, B Wang, Y Wang Frontiers in bioengineering and biotechnology 8, 701, 2020 | 25 | 2020 |
Reprogramming One-Carbon Metabolic Pathways To Decouple l-Serine Catabolism from Cell Growth in Corynebacterium glutamicum Y Zhang, X Shang, S Lai, Y Zhang, Q Hu, X Chai, B Wang, S Liu, T Wen ACS Synthetic Biology 7 (2), 635-646, 2018 | 21 | 2018 |
A cross-cohort computational framework to trace tumor tissue-of-origin based on RNA sequencing B He, H Sun, M Bao, H Li, J He, G Tian, B Wang Scientific reports 13 (1), 15356, 2023 | 19 | 2023 |
Integrated Comparative Genomic Analysis and Phenotypic Profiling of Pseudomonas aeruginosa Isolates From Crude Oil A Xu, D Wang, Y Ding, Y Zheng, B Wang, Q Wei, S Wang, L Yang, LZ Ma Frontiers in Microbiology 11, 519, 2020 | 16 | 2020 |
A novel XGBoost method to infer the primary lesion of 20 solid tumor types from gene expression data S Chen, W Zhou, J Tu, J Li, B Wang, X Mo, G Tian, K Lv, Z Huang Frontiers in genetics 12, 632761, 2021 | 14 | 2021 |
[Retracted] Identification of Tumor Tissue of Origin with RNA‐Seq Data and Using Gradient Boosting Strategy R Li, B Liao, B Wang, C Dai, X Liang, G Tian, F Wu BioMed research international 2021 (1), 6653793, 2021 | 11 | 2021 |
Community detection and visualization in complex network by the density-canopy-Kmeans algorithm and MDS embedding M Li, H Wang, H Long, J Xiang, B Wang, J Xu, J Yang IEEE Access 7, 120616-120625, 2019 | 10 | 2019 |
Predicting cancer tissue-of-origin by a machine learning method using DNA somatic mutation data X Liu, L Li, L Peng, B Wang, J Lang, Q Lu, X Zhang, Y Sun, G Tian, ... Frontiers in genetics 11, 674, 2020 | 9 | 2020 |
DL-CNV: A deep learning method for identifying copy number variations based on next generation target sequencing YX Zhang, LC Jin, B Wang, DH Hu, LQ Wang, P Li, J Zhang, K Han, ... Math. Biosci. Eng 17, 202-215, 2020 | 8 | 2020 |
A machine learning approach for tracing tumor original sites with gene expression profiles X Liang, W Zhu, B Liao, B Wang, J Yang, X Mo, R Li Frontiers in bioengineering and biotechnology 8, 607126, 2020 | 6 | 2020 |
A novel method to identify the differences between two single cell groups at single gene, gene pair, and gene module levels L Cui, B Wang, C Ren, A Wang, H An, W Liang Frontiers in Genetics 12, 648898, 2021 | 4 | 2021 |
Molecular characterization of colorectal adenoma and colorectal cancer via integrated genomic transcriptomic analysis P Pan, J Li, B Wang, X Tan, H Yin, Y Han, H Wang, X Shi, X Li, C Xie, ... Frontiers in Oncology 13, 1067849, 2023 | 2 | 2023 |