Microbiome datasets are compositional: and this is not optional GB Gloor, JM Macklaim, V Pawlowsky-Glahn, JJ Egozcue Frontiers in microbiology 8, 2224, 2017 | 2150 | 2017 |
Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis AD Fernandes, JN Reid, JM Macklaim, TA McMurrough, DR Edgell, ... Microbiome 2, 1-13, 2014 | 994 | 2014 |
ANOVA-like differential expression (ALDEx) analysis for mixed population RNA-Seq AD Fernandes, JM Macklaim, TG Linn, G Reid, GB Gloor PloS one 8 (7), e67019, 2013 | 634 | 2013 |
Microbiota of human breast tissue C Urbaniak, J Cummins, M Brackstone, JM Macklaim, GB Gloor, ... Applied and environmental microbiology 80 (10), 3007-3014, 2014 | 474 | 2014 |
Microbiome profiling by illumina sequencing of combinatorial sequence-tagged PCR products GB Gloor, R Hummelen, JM Macklaim, RJ Dickson, AD Fernandes, ... PLoS One 5 (10), e15406, 2010 | 342 | 2010 |
Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis JM Macklaim, AD Fernandes, JM Di Bella, JA Hammond, G Reid, ... Microbiome 1, 1-11, 2013 | 336 | 2013 |
Deep sequencing of the vaginal microbiota of women with HIV R Hummelen, AD Fernandes, JM Macklaim, RJ Dickson, J Changalucha, ... PloS one 5 (8), e12078, 2010 | 323 | 2010 |
At the crossroads of vaginal health and disease, the genome sequence of Lactobacillus iners AB-1 JM Macklaim, GB Gloor, KC Anukam, S Cribby, G Reid Proceedings of the National Academy of Sciences 108 (supplement_1), 4688-4695, 2011 | 293 | 2011 |
Vaginal microbiome and epithelial gene array in post-menopausal women with moderate to severe dryness R Hummelen, JM Macklaim, JE Bisanz, JA Hammond, A McMillan, ... PloS one 6 (11), e26602, 2011 | 222 | 2011 |
Changes in vaginal microbiota following antimicrobial and probiotic therapy JM Macklaim, JC Clemente, R Knight, GB Gloor, G Reid Microbial ecology in health and disease 26 (1), 27799, 2015 | 171 | 2015 |
Microbiome datasets are compositional: and this is not optional. Front Microbiol 8: 2224 GB Gloor, JM Macklaim, V Pawlowsky-Glahn, JJ Egozcue | 154 | 2017 |
A multi-platform metabolomics approach identifies highly specific biomarkers of bacterial diversity in the vagina of pregnant and non-pregnant women A McMillan, S Rulisa, M Sumarah, JM Macklaim, J Renaud, JE Bisanz, ... Scientific reports 5 (1), 14174, 2015 | 141 | 2015 |
Displaying variation in large datasets: plotting a visual summary of effect sizes GB Gloor, JM Macklaim, AD Fernandes Journal of Computational and Graphical Statistics 25 (3), 971-979, 2016 | 132 | 2016 |
Microbiota at multiple body sites during pregnancy in a rural Tanzanian population and effects of Moringa-supplemented probiotic yogurt JE Bisanz, MK Enos, G PrayGod, S Seney, JM Macklaim, S Chilton, ... Applied and environmental microbiology 81 (15), 4965-4975, 2015 | 112 | 2015 |
Persistence of the Oral Probiotic Streptococcus salivarius M18 Is Dose Dependent and Megaplasmid Transfer Can Augment Their Bacteriocin Production and … JP Burton, PA Wescombe, JM Macklaim, MHC Chai, K MacDonald, ... PloS one 8 (6), e65991, 2013 | 98 | 2013 |
Adhesion of Lactobacillus iners AB-1 to Human Fibronectin: A Key Mediator for Persistence in the Vagina? A McMillan, JM Macklaim, JP Burton, G Reid Reproductive Sciences 20 (7), 791-796, 2013 | 86 | 2013 |
Genome sequence of Lactobacillus pentosus KCA1: vaginal isolate from a healthy premenopausal woman KC Anukam, JM Macklaim, GB Gloor, G Reid, J Boekhorst, B Renckens, ... PloS one 8 (3), e59239, 2013 | 72 | 2013 |
Responders and non-responders to probiotic interventions: How can we improve the odds? G Reid, E Gaudier, F Guarner, GB Huffnagle, JM Macklaim, AM Munoz, ... Gut Microbes 1 (3), 200, 2010 | 72 | 2010 |
Compositional uncertainty should not be ignored in high-throughput sequencing data analysis GB Gloor, JM Macklaim, M Vu, AD Fernandes Austrian Journal of Statistics 45 (4), 73-87, 2016 | 64 | 2016 |
Subinhibitory antibiotic therapy alters recurrent urinary tract infection pathogenesis through modulation of bacterial virulence and host immunity LW Goneau, TJ Hannan, RA MacPhee, DJ Schwartz, JM Macklaim, ... MBio 6 (2), 10.1128/mbio. 00356-15, 2015 | 62 | 2015 |