| UniProt: a hub for protein information UniProt Consortium Nucleic acids research 43 (D1), D204-D212, 2015 | 19222* | 2015 |
| ACPYPE-Antechamber python parser interface AWS Da Silva, WF Vranken BMC research notes 5 (1), 1-8, 2012 | 2518 | 2012 |
| Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature methods 13 (5), 425-430, 2016 | 412* | 2016 |
| PDBe: protein data bank in Europe S Velankar, C Best, B Beuth, CH Boutselakis, N Cobley, ... Nucleic acids research 38 (suppl_1), D308-D317, 2010 | 213 | 2010 |
| CING: an integrated residue-based structure validation program suite JF Doreleijers, AW Sousa da Silva, E Krieger, SB Nabuurs, CAEM Spronk, ... Journal of biomolecular NMR 54, 267-283, 2012 | 136 | 2012 |
| Molecular dynamics simulations applied to the study of subtypes of HIV-1 protease common to Brazil, Africa, and Asia PR Batista, A Wilter, EHAB Durham, PG Pascutti Cell biochemistry and biophysics 44, 395-404, 2006 | 56 | 2006 |
| Molecular dynamics of the interaction of pralidoxime and deazapralidoxime with acetylcholinesterase inhibited by the neurotoxic agent tabun AS Gonçalves, TCC França, A Wilter, JD Figueroa-Villar Journal of the Brazilian Chemical Society 17, 968-975, 2006 | 46 | 2006 |
| Molecular dynamics of the interaction of Plasmodium falciparum and human serine hydroxymethyltransferase with 5-formyl-6-hydrofolic acid analogues: design of new potential … TCC França, A Wilter, TC Ramalho, PG Pascutti, JD Figueroa-Villar Journal of the Brazilian Chemical Society 17, 1383-1392, 2006 | 34 | 2006 |
| The ACPYPE web server for small-molecule MD topology generation L Kagami, A Wilter, A Diaz, W Vranken Bioinformatics 39 (6), btad350, 2023 | 25 | 2023 |
| LiGRO: a graphical user interface for protein–ligand molecular dynamics LP Kagami, GM das Neves, AWS da Silva, RA Caceres, DF Kawano, ... Journal of molecular modeling 23, 1-6, 2017 | 22 | 2017 |
| The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory C Morris, A Pajon, SL Griffiths, E Daniel, M Savitsky, B Lin, JM Diprose, ... Acta Crystallographica Section D: Biological Crystallography 67 (4), 249-260, 2011 | 22 | 2011 |
| First principles calculations of thermodynamics and kinetic parameters and molecular dynamics simulations of acetylcholinesterase reactivators: can mouse data provide new … KS Matos, EFF da Cunha, A da Silva Gonçalves, A Wilter, K Kuča, ... Journal of Biomolecular Structure and Dynamics 30 (5), 546-558, 2012 | 20 | 2012 |
| Topology and dynamics of the interaction between 5-nitroimidazole radiosensitizers and duplex DNA studied by a combination of docking, molecular dynamic simulations and NMR … TC Ramalho, TCC França, WA Cortopassi, AS Gonçalves, AWS Da Silva, ... Journal of Molecular Structure 992 (1-3), 65-71, 2011 | 18 | 2011 |
| The biopaua project: A portal for molecular dynamics using grid environment A Wilter, C Osthoff, C Oliveira, DEB Gomes, E Hill, LE Dardenne, ... Advances in Bioinformatics and Computational Biology: Brazilian Symposium on …, 2005 | 10 | 2005 |
| Chemoinformatics: directions toward combating neglected diseases TC Ramalho, MP Freitas, EFF Da Cunha Bentham Science Publishers, 2012 | 8 | 2012 |
| Quest for Orthologs consortium ELL Sonnhammer, T Gabaldón, AW Sousa da Silva, M Martin, ... Big data and other challenges in the quest for orthologs. Bioinformatics 30 …, 2014 | 6 | 2014 |
| Reductive nitrosylation of water-soluble iron porphyrins by S-nitroso-N-acetylpenicillamine: rate constants and EPR characterization FSDS Vilhena, AWS da Silva, SRW Louro Journal of inorganic biochemistry 100 (11), 1722-1729, 2006 | 6 | 2006 |
| Utilização do Software MyGrid para adaptar uma aplicação de dinâmica molecular em uma Grade Computacional P Barros, C Veronez, C Osthoff, W Cirne, E Neto, L Costa, F Silva, A Silva, ... II ERAD–(Janeiro 2003), 0 | 1 | |
| Nitric oxide ligation with water-soluble meso-tetrasubstituted iron-porphyrins: Influence of albumin and detergents AWS da Silva, E Wajnberg, SRW Louro BIOPHYSICAL JOURNAL 76 (1), A423-A423, 1999 | | 1999 |
| Nitric oxide transfer from S-nitrosothiols to the hemes of oxy and deoxyhemoglobin AWS da Silva, FR Burgel, KC Garcia, E Wajnberg, SRW Louro BIOPHYSICAL JOURNAL 74 (2), A85-A85, 1998 | | 1998 |
