| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 168 | 2016 |
| Architecture of the human and yeast general transcription and DNA repair factor TFIIH J Luo, P Cimermancic, S Viswanath, CC Ebmeier, B Kim, M Dehecq, ... Molecular cell 59 (5), 794-806, 2015 | 107 | 2015 |
| Integrative structure modeling with the Integrative Modeling Platform B Webb, S Viswanath, M Bonomi, R Pellarin, CH Greenberg, D Saltzberg, ... Protein Science 27 (1), 245-258, 2018 | 100 | 2018 |
| Assessing exhaustiveness of stochastic sampling for integrative modeling of macromolecular structures S Viswanath, IE Chemmama, P Cimermancic, A Sali Biophysical Journal 113 (11), 2344-2353, 2017 | 72 | 2017 |
| Improving ranking of models for protein complexes with side chain modeling and atomic potentials S Viswanath, DVS Ravikant, R Elber Proteins: Structure, Function, and Bioinformatics 81 (4), 592-606, 2013 | 63 | 2013 |
| The molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modeling S Viswanath, M Bonomi, SJ Kim, VA Klenchin, KC Taylor, KC Yabut, ... Molecular biology of the cell 28 (23), 3298-3314, 2017 | 50 | 2017 |
| Modeling biological complexes using integrative modeling platform D Saltzberg, CH Greenberg, S Viswanath, I Chemmama, B Webb, ... Biomolecular Simulations: Methods and Protocols, 353-377, 2019 | 41* | 2019 |
| Using Integrative Modeling Platform to compute, validate, and archive a model of a protein complex structure DJ Saltzberg, S Viswanath, I Echeverria, IE Chemmama, B Webb, A Sali Protein Science 30 (1), 250-261, 2021 | 31 | 2021 |
| DOCK/PIERR: web server for structure prediction of protein–protein complexes S Viswanath, DVS Ravikant, R Elber Protein Structure Prediction, 199-207, 2014 | 31 | 2014 |
| Analyzing milestoning networks for molecular kinetics: Definitions, algorithms, and examples S Viswanath, SM Kreuzer, AE Cardenas, R Elber The Journal of Chemical Physics 139 (17), 2013 | 31 | 2013 |
| CM1-driven assembly and activation of yeast γ-tubulin small complex underlies microtubule nucleation AF Brilot, AS Lyon, A Zelter, S Viswanath, A Maxwell, MJ MacCoss, ... Elife 10, e65168, 2021 | 26 | 2021 |
| Optimizing model representation for integrative structure determination of macromolecular assemblies S Viswanath, A Sali Proceedings of the National Academy of Sciences 116 (2), 540-545, 2019 | 23 | 2019 |
| Extension of a protein docking algorithm to membranes and applications to amyloid precursor protein dimerization S Viswanath, L Dominguez, LS Foster, JE Straub, R Elber Proteins: Structure, Function, and Bioinformatics 83 (12), 2170-2185, 2015 | 20 | 2015 |
| Molecular architecture of nucleosome remodeling and deacetylase sub‐complexes by integrative structure determination S Arvindekar, MJ Jackman, JKK Low, MJ Landsberg, JP Mackay, ... Protein Science 31 (9), e4387, 2022 | 13 | 2022 |
| A framework for stochastic optimization of parameters for integrative modeling of macromolecular assemblies S Pasani, S Viswanath Life 11 (11), 1183, 2021 | 6 | 2021 |
| PrISM: precision for integrative structural models V Ullanat, N Kasukurthi, S Viswanath Bioinformatics 38 (15), 3837-3839, 2022 | 5 | 2022 |
| Optimizing representations for integrative structural modeling using Bayesian model selection S Arvindekar, AS Pathak, K Majila, S Viswanath Bioinformatics 40 (3), btae106, 2024 | 4 | 2024 |
| The molecular architecture of the desmosomal outer dense plaque by integrative structural modeling S Pasani, KS Menon, S Viswanath bioRxiv, 2023 | 2 | 2023 |
| Color call improvement in next generation sequencing using multi-class support vector machines S Viswanath, C Yang BMC Bioinformatics 13 (Suppl 18), A3, 2012 | 2 | 2012 |
| Recent methods from statistical inference and machine learning to improve integrative modeling of macromolecular assemblies S Arvindekar, K Majila, S Viswanath arXiv preprint arXiv:2401.17894, 2024 | 1 | 2024 |
