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Yulian Ding
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deepDriver: predicting cancer driver genes based on somatic mutations using deep convolutional neural networks
P Luo, Y Ding, X Lei, FX Wu
Frontiers in genetics 10, 13, 2019
662019
Identification of dynamic protein complexes based on fruit fly optimization algorithm
X Lei, Y Ding, H Fujita, A Zhang
Knowledge-Based Systems 105, 270-277, 2016
582016
Variational graph auto-encoders for miRNA-disease association prediction
Y Ding, LP Tian, X Lei, B Liao, FX Wu
Methods 192, 25-34, 2021
452021
Detecting protein complexes from DPINs by density based clustering with Pigeon-Inspired Optimization Algorithm
X Lei, Y Ding, FX Wu
Science China Information Sciences 59, 1-14, 2016
282016
Predicting novel CircRNA-disease associations based on random walk and logistic regression model
Y Ding, B Chen, X Lei, B Liao, FX Wu
Computational Biology and Chemistry 87, 107287, 2020
202020
Predicting mirna-disease associations based on multi-view variational graph auto-encoder with matrix factorization
Y Ding, X Lei, B Liao, FX Wu
IEEE journal of biomedical and health informatics 26 (1), 446-457, 2021
182021
Deep belief network–based matrix factorization model for MicroRNA-disease associations prediction
Y Ding, F Wang, X Lei, B Liao, FX Wu
Evolutionary Bioinformatics 16, 1176934320919707, 2020
122020
Identifying gene signatures for cancer drug repositioning based on sample clustering
F Wang, Y Ding, X Lei, B Liao, FX Wu
IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (2 …, 2020
92020
MLRDFM: a multi-view Laplacian regularized DeepFM model for predicting miRNA-disease associations
Y Ding, X Lei, B Liao, FX Wu
Briefings in bioinformatics 23 (3), bbac079, 2022
62022
Machine learning approaches for predicting biomolecule–disease associations
Y Ding, X Lei, B Liao, FX Wu
Briefings in Functional Genomics 20 (4), 273-287, 2021
52021
Human protein complex-based drug signatures for personalized cancer medicine
F Wang, Y Ding, X Lei, B Liao, FX Wu
IEEE Journal of Biomedical and Health Informatics 25 (11), 4079-4088, 2021
32021
Biomarker Identification via a Factorization Machine-based Neural Network with Binary Pairwise Encoding
Y Ding, X Lei, B Liao, FX Wu
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2023
12023
A decomposition based evolutionary algorithm with uniform design for multi-objective optimization
C Dai, X Lei, Y Ding
2016 IEEE Congress on Evolutionary Computation (CEC), 2484-2489, 2016
12016
Network Learning for Biomarker Discovery
Y Ding, M Fu, P Luo, FX Wu
International Journal of Network Dynamics and Intelligence, 51-65, 2023
2023
Prediction of exosomal piRNAs based on deep learning for sequence embedding with attention mechanism
Y Liu, Y Ding, A Li, R Fei, X Guo, F Wu
2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022
2022
Unseen Epitope-TCR Interaction Prediction based on Amino Acid Physicochemical Properties
R Raha, Y Ding, Q Liu, FX Wu
2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022
2022
Machine Learning and Deep Learning Strategies in Drug Repositioning
F Wang, Y Ding, X Lei, B Liao, FX Wu
Current Bioinformatics 17 (3), 217-237, 2022
2022
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