Condensed DNA: condensing the concepts VB Teif, K Bohinc Progress in biophysics and molecular biology 105 (3), 208-222, 2011 | 275 | 2011 |
Genome-wide nucleosome positioning during embryonic stem cell development VB Teif, Y Vainshtein, M Caudron-Herger, JP Mallm, C Marth, T Höfer, ... Nature structural & molecular biology 19 (11), 1185-1192, 2012 | 268 | 2012 |
Nucleosome repositioning links DNA (de) methylation and differential CTCF binding during stem cell development VB Teif, DA Beshnova, Y Vainshtein, C Marth, JP Mallm, T Höfer, K Rippe Genome research 24 (8), 1285-1295, 2014 | 155 | 2014 |
Predicting nucleosome positions on the DNA: combining intrinsic sequence preferences and remodeler activities VB Teif, K Rippe Nucleic acids research 37 (17), 5641-5655, 2009 | 139 | 2009 |
Regulation of the nucleosome repeat length in vivo by the DNA sequence, protein concentrations and long-range interactions DA Beshnova, AG Cherstvy, Y Vainshtein, VB Teif PLoS Computational Biology 10 (7), e1003698, 2014 | 88 | 2014 |
DNA (de) methylation in embryonic stem cells controls CTCF-dependent chromatin boundaries L Wiehle, GJ Thorn, G Raddatz, CT Clarkson, K Rippe, F Lyko, A Breiling, ... Genome research 29 (5), 750-761, 2019 | 87 | 2019 |
Statistical–mechanical lattice models for protein–DNA binding in chromatin VB Teif, K Rippe Journal of Physics: Condensed Matter 22 (41), 414105, 2010 | 75 | 2010 |
Ligand-induced DNA condensation: choosing the model VB Teif Biophysical journal 89 (4), 2574-2587, 2005 | 74 | 2005 |
Nucleosome positioning: resources and tools online VB Teif Briefings in bioinformatics 17 (5), 745-757, 2016 | 73 | 2016 |
General transfer matrix formalism to calculate DNA–protein–drug binding in gene regulation: application to O R operator of phage λ VB Teif Nucleic acids research 35 (11), e80, 2007 | 65 | 2007 |
CTCF-dependent chromatin boundaries formed by asymmetric nucleosome arrays with decreased linker length CT Clarkson, EA Deeks, R Samarista, H Mamayusupova, VB Zhurkin, ... Nucleic acids research 47 (21), 11181-11196, 2019 | 52 | 2019 |
Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks JP Mallm, M Iskar, N Ishaque, LC Klett, SJ Kugler, JM Muino, VB Teif, ... Molecular systems biology 15 (5), e8339, 2019 | 51 | 2019 |
Modeling nucleosome position distributions from experimental nucleosome positioning maps R Schöpflin, VB Teif, O Müller, C Weinberg, K Rippe, G Wedemann Bioinformatics 29 (19), 2380-2386, 2013 | 48 | 2013 |
A lattice model for transcription factor access to nucleosomal DNA VB Teif, R Ettig, K Rippe Biophysical Journal 99 (8), 2597-2607, 2010 | 40 | 2010 |
NucTools: analysis of chromatin feature occupancy profiles from high-throughput sequencing data Y Vainshtein, K Rippe, VB Teif BMC genomics 18, 1-13, 2017 | 39 | 2017 |
Nucleosome mediated crosstalk between transcription factors at eukaryotic enhancers VB Teif, K Rippe Physical biology 8 (4), 044001, 2011 | 35 | 2011 |
Predicting gene-regulation functions: lessons from temperate bacteriophages VB Teif Biophysical journal 98 (7), 1247-1256, 2010 | 34 | 2010 |
Long-range interactions between ligands bound to a DNA molecule give rise to adsorption with the character of phase transition of the first kind DY Lando, VB Teif Journal of Biomolecular Structure and Dynamics 17 (5), 903-911, 2000 | 34 | 2000 |
Structure-driven homology pairing of chromatin fibers: the role of electrostatics and protein-induced bridging AG Cherstvy, VB Teif Journal of biological physics 39, 363-385, 2013 | 33 | 2013 |
Calculating transcription factor binding maps for chromatin VB Teif, K Rippe Briefings in bioinformatics 13 (2), 187-201, 2012 | 31 | 2012 |