In-feed antibiotic effects on the swine intestinal microbiome T Looft, TA Johnson, HK Allen, DO Bayles, DP Alt, RD Stedtfeld, WJ Sul, ... Proceedings of the National Academy of Sciences 109 (5), 1691-1696, 2012 | 1120 | 2012 |
Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations T Looft, HK Allen, BL Cantarel, UY Levine, DO Bayles, DP Alt, B Henrissat, ... The ISME journal 8 (8), 1566-1576, 2014 | 435 | 2014 |
Treatment, promotion, commotion: antibiotic alternatives in food-producing animals HK Allen, UY Levine, T Looft, M Bandrick, TA Casey Trends in microbiology 21 (3), 114-119, 2013 | 412 | 2013 |
Finding alternatives to antibiotics HK Allen, J Trachsel, T Looft, TA Casey Annals of the New York Academy of Sciences 1323 (1), 91-100, 2014 | 295 | 2014 |
Antibiotics in feed induce prophages in swine fecal microbiomes HK Allen, T Looft, DO Bayles, S Humphrey, UY Levine, D Alt, TB Stanton MBio 2 (6), 10.1128/mbio. 00260-11, 2011 | 224 | 2011 |
Collateral effects of antibiotics on mammalian gut microbiomes T Looft, HK Allen Gut microbes 3 (5), 463-467, 2012 | 206 | 2012 |
Clusters of antibiotic resistance genes enriched together stay together in swine agriculture TA Johnson, RD Stedtfeld, Q Wang, JR Cole, SA Hashsham, T Looft, ... MBio 7 (2), 10.1128/mbio. 02214-15, 2016 | 189 | 2016 |
Carbadox has both temporary and lasting effects on the swine gut microbiota T Looft, HK Allen, TA Casey, DP Alt, TB Stanton Frontiers in microbiology 5, 276, 2014 | 117 | 2014 |
A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity D Wylensek, TCA Hitch, T Riedel, A Afrizal, N Kumar, E Wortmann, T Liu, ... Nature communications 11 (1), 6389, 2020 | 111 | 2020 |
Profiling the gastrointestinal microbiota in response to Salmonella: low versus high Salmonella shedding in the natural porcine host SMD Bearson, HK Allen, BL Bearson, T Looft, BW Brunelle, JD Kich, ... Infection, Genetics and Evolution 16, 330-340, 2013 | 97 | 2013 |
Butyrate-producing bacteria, including mucin degraders, from the swine intestinal tract UY Levine, T Looft, HK Allen, TB Stanton Applied and environmental microbiology 79 (12), 3879-3881, 2013 | 90 | 2013 |
Cloacibacillus porcorum sp. nov., a mucin-degrading bacterium from the swine intestinal tract and emended description of the genus Cloacibacillus T Looft, UY Levine, TB Stanton International journal of systematic and evolutionary microbiology 63 (Pt_6 …, 2013 | 86 | 2013 |
The microbial pecking order: utilization of intestinal microbiota for poultry health JJ Maki, CL Klima, MJ Sylte, T Looft Microorganisms 7 (10), 376, 2019 | 73 | 2019 |
Pipeline for amplifying and analyzing amplicons of the V1–V3 region of the 16S rRNA gene HK Allen, DO Bayles, T Looft, J Trachsel, BE Bass, DP Alt, SMD Bearson, ... BMC research notes 9 (1), 380, 2016 | 69 | 2016 |
Eggshell and environmental bacteria contribute to the intestinal microbiota of growing chickens JJ Maki, EA Bobeck, MJ Sylte, T Looft Journal of Animal Science and Biotechnology 11, 1-17, 2020 | 53 | 2020 |
Horizontal Gene Transfer and Acquired Antibiotic Resistance in Salmonella enterica Serovar Heidelberg following In Vitro Incubation in Broiler Ceca A Oladeinde, K Cook, SM Lakin, R Woyda, Z Abdo, T Looft, K Herrington, ... Applied and environmental microbiology 85 (22), e01903-19, 2019 | 45 | 2019 |
Reused poultry litter microbiome with competitive exclusion potential against Salmonella Heidelberg MG Bucher, B Zwirzitz, A Oladeinde, K Cook, C Plymel, G Zock, S Lakin, ... Journal of Environmental Quality 49 (4), 869-881, 2020 | 40 | 2020 |
The in-feed antibiotic carbadox induces phage gene transcription in the swine gut microbiome TA Johnson, T Looft, AJ Severin, DO Bayles, DJ Nasko, KE Wommack, ... MBio 8 (4), 10.1128/mbio. 00709-17, 2017 | 40 | 2017 |
In-feed bacitracin methylene disalicylate modulates the turkey microbiota and metabolome in a dose-dependent manner TA Johnson, MJ Sylte, T Looft Scientific reports 9 (1), 8212, 2019 | 38 | 2019 |
Function and phylogeny of bacterial butyryl coenzyme a: acetate transferases and their diversity in the proximal colon of swine J Trachsel, DO Bayles, T Looft, UY Levine, HK Allen Applied and environmental microbiology 82 (22), 6788-6798, 2016 | 29 | 2016 |