Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3 F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ... elife 10, e65088, 2021 | 1100 | 2021 |
Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals F Asnicar, SE Berry, AM Valdes, LH Nguyen, G Piccinno, DA Drew, ... Nature medicine 27 (2), 321-332, 2021 | 632 | 2021 |
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4 A Blanco-Míguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ... Nature Biotechnology 41 (11), 1633-1644, 2023 | 293 | 2023 |
The person-to-person transmission landscape of the gut and oral microbiomes M Valles-Colomer, A Blanco-Míguez, P Manghi, F Asnicar, L Dubois, ... Nature 614 (7946), 125-135, 2023 | 174 | 2023 |
Birthmode and environment-dependent microbiota transmission dynamics are complemented by breastfeeding during the first year M Selma-Royo, L Dubois, S Manara, F Armanini, R Cabrera-Rubio, ... Cell host & microbe 32 (6), 996-1010. e4, 2024 | 1 | 2024 |
Paternal and induced gut microbiota seeding complement mother-to-infant transmission L Dubois, M Valles-Colomer, A Ponsero, O Helve, S Andersson, KL Kolho, ... Cell Host & Microbe 32 (6), 1011-1024. e4, 2024 | 1 | 2024 |
Microbial composition associated with biliary stents in patients undergoing pancreatic resection for cancer A Blanco-Míguez, S Carloni, C Cardenas, CC Dioguardi, L Lambroia, ... npj Biofilms and Microbiomes 10 (1), 35, 2024 | | 2024 |
Phylogenetic and functional characterization of human microbiome intra-species diversity and tracking of early-life transmission L Dubois Università degli studi di Trento, 2023 | | 2023 |