Large-scale compression of genomic sequence databases with the Burrows–Wheeler transform AJ Cox, MJ Bauer, T Jakobi, G Rosone Bioinformatics 28 (11), 1415-1419, 2012 | 175 | 2012 |
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering M Hackl, T Jakobi, J Blom, D Doppmeier, K Brinkrolf, R Szczepanowski, ... Journal of biotechnology 153 (1-2), 62-75, 2011 | 129 | 2011 |
Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing J Becker, M Hackl, O Rupp, T Jakobi, J Schneider, R Szczepanowski, ... Journal of biotechnology 156 (3), 227-235, 2011 | 128 | 2011 |
Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming J Blom, T Jakobi, D Doppmeier, S Jaenicke, J Kalinowski, J Stoye, ... Bioinformatics 27 (10), 1351-1358, 2011 | 118 | 2011 |
Profiling and validation of the circular RNA repertoire in adult murine hearts T Jakobi, LF Czaja-Hasse, R Reinhardt, C Dieterich Genomics, proteomics and bioinformatics 14 (4), 216-223, 2016 | 103 | 2016 |
Integrin-linked kinase regulates the niche of quiescent epidermal stem cells J Morgner, S Ghatak, T Jakobi, C Dieterich, M Aumailley, SA Wickström Nature communications 6 (1), 8198, 2015 | 100 | 2015 |
ATF6 regulates cardiac hypertrophy by transcriptional induction of the mTORC1 activator, Rheb EA Blackwood, C Hofmann, M Santo Domingo, AS Bilal, A Sarakki, ... Circulation research 124 (1), 79-93, 2019 | 96 | 2019 |
Computational approaches for circular RNA analysis T Jakobi, C Dieterich Wiley Interdisciplinary Reviews: RNA 10 (3), e1528, 2019 | 68 | 2019 |
Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines M Hackl, V Jadhav, T Jakobi, O Rupp, K Brinkrolf, A Goesmann, A Pühler, ... Journal of Biotechnology 158 (3), 151-155, 2012 | 60 | 2012 |
Monitoring cell-type–specific gene expression using ribosome profiling in vivo during cardiac hemodynamic stress S Doroudgar, C Hofmann, E Boileau, B Malone, E Riechert, AA Gorska, ... Circulation research 125 (4), 431-448, 2019 | 55 | 2019 |
circtools—a one-stop software solution for circular RNA research T Jakobi, A Uvarovskii, C Dieterich Bioinformatics 35 (13), 2326-2328, 2019 | 53 | 2019 |
ADAR-deficiency perturbs the global splicing landscape in mouse tissues U Kapoor, K Licht, F Amman, T Jakobi, D Martin, C Dieterich, MF Jantsch Genome research 30 (8), 1107-1118, 2020 | 44 | 2020 |
Increased susceptibility of human endothelial cells to infections by SARS-CoV-2 variants JUG Wagner, D Bojkova, M Shumliakivska, G Luxán, L Nicin, GS Aslan, ... Basic Research in Cardiology 116, 1-12, 2021 | 40 | 2021 |
Deep characterization of circular RNAs from human cardiovascular cell models and cardiac tissue T Jakobi, D Siede, J Eschenbach, AW Heumüller, M Busch, R Nietsch, ... Cells 9 (7), 1616, 2020 | 31 | 2020 |
Early Response of Sulfolobus acidocaldarius to Nutrient Limitation LF Bischof, MF Haurat, L Hoffmann, A Albersmeier, J Wolf, A Neu, ... Frontiers in Microbiology 9, 3201, 2019 | 28 | 2019 |
Comparing DNA sequence collections by direct comparison of compressed text indexes AJ Cox, T Jakobi, G Rosone, OB Schulz-Trieglaff Algorithms in Bioinformatics: 12th International Workshop, WABI 2012 …, 2012 | 28 | 2012 |
Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision M Vromman, J Anckaert, S Bortoluzzi, A Buratin, CY Chen, Q Chu, ... Nature methods 20 (8), 1159-1169, 2023 | 27 | 2023 |
Deep computational circular RNA analytics from RNA-seq data T Jakobi, C Dieterich Circular RNAs: Methods and Protocols, 9-25, 2018 | 20 | 2018 |
Proteomic analysis of the cardiac myocyte secretome reveals extracellular protective functions for the ER stress response EA Blackwood, DJ Thuerauf, M Stastna, H Stephens, Z Sand, A Pentoney, ... Journal of molecular and cellular cardiology 143, 132-144, 2020 | 19 | 2020 |
TRUNCATULIX–a data warehouse for the legume community K Henckel, KJ Runte, T Bekel, M Dondrup, T Jakobi, H Küster, ... BMC plant biology 9, 1-11, 2009 | 16 | 2009 |