| Counts and sequences, observations that continue to change our understanding of viruses in nature KE Wommack, DJ Nasko, J Chopyk, EG Sakowski Journal of Microbiology 53, 181-192, 2015 | 77 | 2015 |
| Intestinal virome in patients with alcoholic hepatitis L Jiang, S Lang, Y Duan, X Zhang, B Gao, J Chopyk, LK Schwanemann, ... Hepatology 72 (6), 2182-2196, 2020 | 68 | 2020 |
| The virome of cerebrospinal fluid: viruses where we once thought there were none C Ghose, M Ly, LK Schwanemann, JH Shin, K Atab, JJ Barr, M Little, ... Frontiers in microbiology, 2061, 2019 | 51 | 2019 |
| Temporal variations in cigarette tobacco bacterial community composition and tobacco-specific nitrosamine content are influenced by brand and storage conditions J Chopyk, S Chattopadhyay, P Kulkarni, EM Smyth, LE Hittle, JN Paulson, ... Frontiers in Microbiology 8, 358, 2017 | 50 | 2017 |
| Agricultural freshwater pond supports diverse and dynamic bacterial and viral populations J Chopyk, S Allard, DJ Nasko, A Bui, EF Mongodin, AR Sapkota Frontiers in microbiology, 792, 2018 | 36 | 2018 |
| Creek to Table: Tracking fecal indicator bacteria, bacterial pathogens, and total bacterial communities from irrigation water to kale and radish crops SM Allard, MT Callahan, A Bui, AMC Ferelli, J Chopyk, S Chattopadhyay, ... Science of The Total Environment 666, 461-471, 2019 | 34 | 2019 |
| Mentholation affects the cigarette microbiota by selecting for bacteria resistant to harsh environmental conditions and selecting against potential bacterial pathogens J Chopyk, S Chattopadhyay, P Kulkarni, E Claye, KR Babik, MC Reid, ... Microbiome 5 (1), 1-13, 2017 | 34 | 2017 |
| Fecal viral community responses to high-fat diet in mice A Schulfer, TM Santiago-Rodriguez, M Ly, JM Borin, J Chopyk, MJ Blaser, ... MSphere 5 (1), 10.1128/msphere. 00833-19, 2020 | 30 | 2020 |
| Presence of pathogenic Escherichia coli is correlated with bacterial community diversity and composition on pre-harvest cattle hides J Chopyk, RM Moore, Z DiSpirito, ZR Stromberg, GL Lewis, DG Renter, ... Microbiome 4 (1), 1-11, 2016 | 29 | 2016 |
| Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome CE Jung, J Chopyk, JH Shin, ES Lukacz, L Brubaker, LK Schwanemann, ... Scientific reports 9 (1), 13409, 2019 | 24 | 2019 |
| Compositional differences in the oral microbiome of e-cigarette users J Chopyk, CM Bojanowski, J Shin, A Moshensky, AL Fuentes, SS Bonde, ... Frontiers in Microbiology 12, 599664, 2021 | 23 | 2021 |
| Comparative metagenomic analysis of microbial taxonomic and functional variations in untreated surface and reclaimed waters used in irrigation applications J Chopyk, DJ Nasko, S Allard, A Bui, T Treangen, M Pop, EF Mongodin, ... Water research 169, 115250, 2020 | 22 | 2020 |
| Family A DNA polymerase phylogeny uncovers diversity and replication gene organization in the virioplankton DJ Nasko, J Chopyk, EG Sakowski, BD Ferrell, SW Polson, KE Wommack Frontiers in microbiology 9, 3053, 2018 | 20 | 2018 |
| Seasonal dynamics in taxonomy and function within bacterial and viral metagenomic assemblages recovered from a freshwater agricultural pond J Chopyk, DJ Nasko, S Allard, A Bui, M Pop, EF Mongodin, AR Sapkota Environmental Microbiome 15 (1), 1-16, 2020 | 16 | 2020 |
| Zero-valent iron sand filtration reduces concentrations of virus-like particles and modifies virome community composition in reclaimed water used for agricultural irrigation J Chopyk, P Kulkarni, DJ Nasko, R Bradshaw, KE Kniel, P Chiu, ... BMC research notes 12, 1-8, 2019 | 16 | 2019 |
| Metagenomic analysis of bacterial and viral assemblages from a freshwater creek and irrigated field reveals temporal and spatial dynamics J Chopyk, DJ Nasko, S Allard, MT Callahan, A Bui, AMC Ferelli, ... Science of the Total Environment 706, 135395, 2020 | 15 | 2020 |
| Temporal variations in bacterial community diversity and composition throughout intensive care unit renovations J Chopyk, K Akrami, T Bavly, JH Shin, LK Schwanemann, M Ly, R Kalia, ... Microbiome 8, 1-15, 2020 | 14 | 2020 |
| Aseptic barriers allow a clean contact for contaminated stethoscope diaphragms R Vasudevan, JH Shin, J Chopyk, WF Peacock, FJ Torriani, AS Maisel, ... Mayo Clinic Proceedings: Innovations, Quality & Outcomes 4 (1), 21-30, 2020 | 14 | 2020 |
| The bacterial communities of little cigars and cigarillos are dynamic over time and varying storage conditions EM Smyth, S Chattopadhyay, K Babik, M Reid, J Chopyk, L Malayil, ... Frontiers in Microbiology 10, 2371, 2019 | 12 | 2019 |
| Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up … JS Meisel, DJ Nasko, B Brubach, V Cepeda-Espinoza, J Chopyk, ... Microbiome 6, 1-10, 2018 | 10 | 2018 |
