| The Drosophila melanogaster Genetic Reference Panel TFC Mackay, S Richards, EA Stone, A Barbadilla, JF Ayroles, D Zhu, ... Nature 482 (7384), 173-178, 2012 | 1794 | 2012 |
| Population Genomics of the Wolbachia Endosymbiont in Drosophila melanogaster MF Richardson, LA Weinert, JJ Welch, RS Linheiro, MM Magwire, ... PLoS genetics 8 (12), e1003129, 2012 | 212 | 2012 |
| Whole genome resequencing reveals natural target site preferences of transposable elements in Drosophila melanogaster RS Linheiro, CM Bergman PloS one 7 (2), e30008, 2012 | 138 | 2012 |
| McClintock: an integrated pipeline for detecting transposable element insertions in whole-genome shotgun sequencing data MG Nelson, RS Linheiro, CM Bergman G3: Genes, Genomes, Genetics 7 (8), 2763-2778, 2017 | 85 | 2017 |
| Testing the palindromic target site model for DNA transposon insertion using the Drosophila melanogaster P-element RS Linheiro, CM Bergman Nucleic acids research 36 (19), 6199-6208, 2008 | 44 | 2008 |
| Genetic variation in the conjugative plasmidome of a hospital effluent multidrug resistant Escherichia coli strain C Ferreira, D Bogas, SK Bikarolla, AR Varela, K Frykholm, R Linheiro, ... Chemosphere 220, 748-759, 2019 | 11 | 2019 |
| The Silene latifolia genome and its giant Y chromosome C Moraga, C Branco, Q Rougemont, P Veltsos, P Jedlicka, A Muyle, ... bioRxiv, 2023.09. 21.558754, 2023 | 5 | 2023 |
| CStone: A de novo transcriptome assembler for short-read data that identifies non-chimeric contigs based on underlying graph structure R Linheiro, J Archer PLoS computational biology 17 (11), e1009631, 2021 | 5 | 2021 |
| Evaluation of a bacteriocinogenic Lactobacillus plantarum strain on the microbiological characteristics of “Alheira de Vitela” A Macieira, H Albano, M Pinto, R Linheiro, J Barbosa, P Teixeira AIMS Agriculture and Food 4 (2), 223-236, 2019 | 3 | 2019 |
| Quantification of the effects of chimerism on read mapping, differential expression and annotation following short-read de novo assembly. R Linheiro, J Archer F1000Research 11, 120, 2022 | 1 | 2022 |
| On taming the effect of transcript level intra-condition count variation during differential expression analysis: A story of dogs, foxes and wolves D Lobo, R Linheiro, R Godinho, JP Archer Plos one 17 (9), e0274591, 2022 | | 2022 |
| CView: A network based tool for enhanced alignment visualization R Linheiro, S Sabatino, D Lobo, J Archer Plos one 17 (6), e0259726, 2022 | | 2022 |
| Antimicrobial resistance profiles after conjugative events with an escherichia coli isolate from hospital effluent C Ferreira, D Bogas, R Linheiro, AR Varela, OC Nunes, CM Manaia 7th Congress of European Microbiologists, 2017 | | 2017 |
| Computational analysis of transposable element target site preferences in Drosophila melanogaster RS Linheiro PQDT-UK & Ireland, 2011 | | 2011 |
| Promoter targeting preferences of the D. melanogaster P-element RS Linheiro, CM Bergman | | |
