| Quantification of tumor heterogeneity: from data acquisition to metric generation A Kashyap, MA Rapsomaniki, V Barros, A Fomitcheva-Khartchenko, ... Trends in Biotechnology 40 (6), 647-676, 2022 | 50 | 2022 |
| A Single‐Stranded DNA‐Encoded Chemical Library Based on a Stereoisomeric Scaffold Enables Ligand Discovery by Modular Assembly of Building Blocks G Bassi, N Favalli, M Vuk, M Catalano, A Martinelli, A Trenner, A Porro, ... Advanced Science 7 (22), 2001970, 2020 | 41 | 2020 |
| Comparative evaluation of DNA-encoded chemical selections performed using DNA in single-stranded or double-stranded format G Bassi, N Favalli, S Oehler, A Martinelli, M Catalano, J Scheuermann, ... Biochemical and biophysical research communications 533 (2), 223-229, 2020 | 16 | 2020 |
| ATHENA: analysis of tumor heterogeneity from spatial omics measurements AL Martinelli, MA Rapsomaniki Bioinformatics 38 (11), 3151-3153, 2022 | 14 | 2022 |
| Universal encoding of next generation DNA-encoded chemical libraries L Plais, A Lessing, M Keller, A Martinelli, S Oehler, G Bassi, D Neri, ... Chemical Science 13 (4), 967-974, 2022 | 14 | 2022 |
| Matching single cells across modalities with contrastive learning and optimal transport F Gossi, P Pati, P Chouvardas, AL Martinelli, M Kruithof-de Julio, ... Briefings in bioinformatics 24 (3), bbad130, 2023 | 8 | 2023 |
| Highly pure DNA-encoded chemical libraries by dual-linker solid-phase synthesis M Keller, D Petrov, A Gloger, B Dietschi, K Jobin, T Gradinger, A Martinelli, ... Science 384 (6701), 1259-1265, 2024 | 1 | 2024 |
| Multiplexed tumor profiling with generative AI accelerates histopathology workflows and improves clinical predictions P Pati, S Karkampouna, F Bonollo, E Comperat, M Radic, M Spahn, ... bioRxiv, 2023.11. 29.568996, 2023 | 1 | 2023 |
| MatchCLOT: Single-Cell Modality Matching with Contrastive Learning and Optimal Transport F Gossi, P Pati, A Martinelli, MA Rapsomaniki bioRxiv, 2022.11. 16.516751, 2022 | 1 | 2022 |
| scQUEST: Quantifying tumor ecosystem heterogeneity from mass or flow cytometry data AL Martinelli, J Wagner, B Bodenmiller, MA Rapsomaniki STAR protocols 3 (3), 101578, 2022 | 1 | 2022 |
| Multiplexed tumor profiling with generative AI accelerates histopathology workflows and improves clinical predictions MA Rapsomaniki, P Pati, S Karkampouna, F Bonollo, E Comperat, ... | | 2023 |
| ChromFormer: A transformer-based model for 3D genome structure prediction H Valeyre, P Pati, F Gossi, VR Somnath, A Martinelli, MA Rapsomaniki bioRxiv, 2022.11. 15.516571, 2022 | | 2022 |
