关注
Olivier Sheik Amamuddy
Olivier Sheik Amamuddy
Research Unit in Bioinformatics
在 ru.ac.za 的电子邮件经过验证
标题
引用次数
引用次数
年份
MD-TASK: a software suite for analyzing molecular dynamics trajectories
DK Brown, DL Penkler, O Sheik Amamuddy, C Ross, AR Atilgan, ...
Bioinformatics 33 (17), 2768-2771, 2017
1492017
Integrated computational approaches and tools for allosteric drug discovery
O Sheik Amamuddy, W Veldman, C Manyumwa, A Khairallah, ...
International journal of molecular sciences 21 (3), 847, 2020
812020
Impact of Early Pandemic Stage Mutations on Molecular Dynamics of SARS-CoV-2 Mpro
O Sheik Amamuddy, GM Verkhivker, O Tastan Bishop
Journal of chemical information and modeling 60 (10), 5080-5102, 2020
762020
MODE-TASK: large-scale protein motion tools
C Ross, B Nizami, M Glenister, O Sheik Amamuddy, AR Atilgan, C Atilgan, ...
Bioinformatics 34 (21), 3759-3763, 2018
422018
Structure-based analysis of single nucleotide variants in the renin-angiotensinogen complex
DK Brown, OS Amamuddy, ÖT Bishop
Global Heart 12 (2), 121-132, 2017
352017
Improving fold resistance prediction of HIV-1 against protease and reverse transcriptase inhibitors using artificial neural networks
O Sheik Amamuddy, NT Bishop, Ö Tastan Bishop
BMC bioinformatics 18, 1-7, 2017
302017
Characterizing early drug resistance-related events using geometric ensembles from HIV protease dynamics
O Sheik Amamuddy, NT Bishop, Ö Tastan Bishop
Scientific Reports 8 (1), 17938, 2018
262018
MDM-TASK-web: MD-TASK and MODE-TASK web server for analyzing protein dynamics
OS Amamuddy, M Glenister, T Tshabalala, ÖT Bishop
Computational and Structural Biotechnology Journal 19, 5059-5071, 2021
25*2021
Polyphenols epigallocatechin gallate and resveratrol, and polyphenol-functionalized nanoparticles prevent enterovirus infection through clustering and stabilization of the viruses
D Reshamwala, S Shroff, O Sheik Amamuddy, V Laquintana, N Denora, ...
Pharmaceutics 13 (8), 1182, 2021
172021
Novel dynamic residue network analysis approaches to study allosteric modulation: SARS-CoV-2 Mpro and its evolutionary mutations as a case study
OS Amamuddy, RA Boateng, V Barozi, DW Nyamai, ÖT Bishop
Computational and Structural Biotechnology Journal 19, 6431-6455, 2021
142021
Allosteric pockets and dynamic residue network hubs of falcipain 2 in mutations including those linked to artemisinin resistance
CJ Okeke, TM Musyoka, OS Amamuddy, V Barozi, ÖT Bishop
Computational and Structural Biotechnology Journal 19, 5647-5666, 2021
132021
Determining the unbinding events and conserved motions associated with the pyrazinamide release due to resistance mutations of Mycobacterium tuberculosis pyrazinamidase
OS Amamuddy, TM Musyoka, RA Boateng, S Zabo, ÖT Bishop
Computational and Structural Biotechnology Journal 18, 1103-1120, 2020
132020
Deciphering Isoniazid Drug Resistance Mechanisms on Dimeric Mycobacterium tuberculosis KatG via Post-molecular Dynamics Analyses Including Combined …
V Barozi, TM Musyoka, O Sheik Amamuddy, O Tastan Bishop
ACS omega 7 (15), 13313-13332, 2022
102022
Antiviral Mechanisms of N-Phenyl Benzamides on Coxsackie Virus A9
M Laajala, K Kalander, S Consalvi, OS Amamuddy, ÖT Bishop, M Biava, ...
Pharmaceutics 15 (3), 1028, 2023
32023
Polyphenols epigallocatechin gallate and resveratrol, and polyphenol-functionalized nanoparticles prevent enterovirus infection. Pharmaceutics. 2021; 13 (8): 1182
D Reshamwala, S Shroff, O Sheik Amamuddy, V Laquintana, N Denora, ...
s Note: MDPI stays neutral with regard to jurisdictional claims in published …, 2021
32021
Slipknot or Crystallographic Error: A Computational Analysis of the Plasmodium falciparum DHFR Structural Folds
RB Tata, AF Alsulami, O Sheik Amamuddy, TL Blundell, Ö Tastan Bishop
International Journal of Molecular Sciences 23 (3), 1514, 2022
22022
Repurposing DrugBank compounds as potential Plasmodium falciparum class 1a aminoacyl tRNA synthetase multi-stage pan-inhibitors with a specific focus on mitomycin
F Olotu, MBT Tali, C Chepsiror, OS Amamuddy, FF Boyom, ÖT Bishop
International Journal for Parasitology: Drugs and Drug Resistance 25, 100548, 2024
2024
Impact of emerging mutations on the dynamic properties the SARS-CoV-2 main protease: an in silico investigation (preprint)
OS Amamuddy, GM Verkhivker, OT Bishop
2020
Computational analysis of missense mutations from the human Macrophage Migration Inhibitory Factor (MIF) protein by Molecular Dynamics Simulations and Dynamic Residue Network …
PM Kimuda, DK Brown, OS Amamuddy, C Ross, E Matovu, ÖT Bishop
Open Res Africa 2 (59), 59, 2019
2019
Characterizing drug resistance using geometric ensembles from HIV protease dynamics
OS Amamuddy, NT Bishop, ÖT Bishop
bioRxiv, 379958, 2018
2018
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