| Greazy: open-source software for automated phospholipid tandem mass spectrometry identification MA Kochen, MC Chambers, JD Holman, AI Nesvizhskii, ST Weintraub, ... Analytical chemistry 88 (11), 5733-5741, 2016 | 58 | 2016 |
| Activated oncogenic pathway modifies iron network in breast epithelial cells: a dynamic modeling perspective J Chifman, S Arat, Z Deng, E Lemler, JC Pino, LA Harris, MA Kochen, ... PLoS computational biology 13 (2), e1005352, 2017 | 27 | 2017 |
| A probabilistic approach to explore signal execution mechanisms with limited experimental data MA Kochen, CF Lopez Frontiers in genetics 11, 686, 2020 | 9 | 2020 |
| Unified tumor growth mechanisms from multimodel inference and dataset integration SP Beik, LA Harris, MA Kochen, J Sage, V Quaranta, CF Lopez PLOS Computational Biology 19 (7), e1011215, 2023 | 7 | 2023 |
| Dynamics and sensitivity of signaling pathways MA Kochen, SS Andrews, HS Wiley, S Feng, HM Sauro Current pathobiology reports 10 (2), 11-22, 2022 | 5 | 2022 |
| The production of exo‐β‐glucosidases from Penicillium spinulosum chemostat and liquid shake cultures TW Wheeler, SN Deffit, MA Kochen, RT Anderson, SJ Bonetti The FASEB Journal 25, 911.3-911.3, 2011 | 2 | 2011 |
| First-order ultrasensitivity in phosphorylation cycles MA Kochen, JL Hellerstein, HM Sauro Interface Focus 14 (1), 20230045, 2024 | 1 | 2024 |
| SBbadger: biochemical reaction networks with definable degree distributions MA Kochen, HS Wiley, S Feng, HM Sauro Bioinformatics 38 (22), 5064-5072, 2022 | 1 | 2022 |
| Signal integration and integral feedback control with biochemical reaction networks SS Andrews, M Kochen, L Smith, S Feng, HS Wiley, HS Sauro bioRxiv, 2024.04. 26.591337, 2024 | | 2024 |
