nucleAIzer: a parameter-free deep learning framework for nucleus segmentation using image style transfer R Hollandi, A Szkalisity, T Toth, E Tasnadi, C Molnar, B Mathe, I Grexa, ... Cell systems 10 (5), 453-458. e6, 2020 | 190 | 2020 |
Phenotypic image analysis software tools for exploring and understanding big image data from cell-based assays K Smith, F Piccinini, T Balassa, K Koos, T Danka, H Azizpour, P Horvath Cell systems 6 (6), 636-653, 2018 | 86 | 2018 |
A deep learning framework for nucleus segmentation using image style transfer R Hollandi, A Szkalisity, T Toth, E Tasnadi, C Molnar, B Mathe, I Grexa, ... Biorxiv, 580605, 2019 | 46 | 2019 |
The NF45/NF90 heterodimer contributes to the biogenesis of 60S ribosomal subunits and influences nucleolar morphology F Wandrey, C Montellese, K Koos, L Badertscher, L Bammert, AG Cook, ... Molecular and cellular biology, 2015 | 40 | 2015 |
Automatic deep learning-driven label-free image-guided patch clamp system K Koos, G Oláh, T Balassa, N Mihut, M Rózsa, A Ozsvár, E Tasnadi, ... Nature communications 12 (1), 1-11, 2021 | 31 | 2021 |
DIC image reconstruction using an energy minimization framework to visualize optical path length distribution K Koos, J Molnár, L Kelemen, G Tamás, P Horvath Scientific reports 6 (1), 30420, 2016 | 22 | 2016 |
SpheroidPicker for automated 3D cell culture manipulation using deep learning I Grexa, A Diosdi, M Harmati, A Kriston, N Moshkov, K Buzas, V Pietiäinen, ... Scientific Reports 11 (1), 14813, 2021 | 21 | 2021 |
Segmentation metric misinterpretations in bioimage analysis D Hirling, E Tasnadi, J Caicedo, MV Caroprese, R Sjögren, M Aubreville, ... Nature methods 21 (2), 213-216, 2024 | 19 | 2024 |
Raman spectral signatures of serum-derived extracellular vesicle-enriched isolates may support the diagnosis of CNS tumors M Bukva, G Dobra, J Gomez-Perez, K Koos, M Harmati, ... Cancers 13 (6), 1407, 2021 | 16 | 2021 |
Cell type-specific arousal-dependent modulation of thalamic activity in the lateral geniculate nucleus B Molnár, P Sere, S Bordé, K Koós, N Zsigri, P Horváth, ML Lőrincz Cerebral cortex communications 2 (2), tgab020, 2021 | 16 | 2021 |
Cell lines and clearing approaches: a single-cell level 3D light-sheet fluorescence microscopy dataset of multicellular spheroids A Diosdi, D Hirling, M Kovacs, T Toth, M Harmati, K Koos, K Buzas, ... Data in Brief 36, 107090, 2021 | 12 | 2021 |
Pipette hunter: patch-clamp pipette detection K Koos, J Molnár, P Horvath Image Analysis: 20th Scandinavian Conference, SCIA 2017, Tromsø, Norway …, 2017 | 8 | 2017 |
A quantitative metric for the comparative evaluation of optical clearing protocols for 3D multicellular spheroids A Diosdi, D Hirling, M Kovacs, T Toth, M Harmati, K Koos, K Buzas, ... Computational and structural biotechnology journal 19, 1233-1243, 2021 | 7 | 2021 |
DIC microscopy image reconstruction using a novel variational framework K Koos, J Molnar, P Horvath 2015 International Conference on Digital Image Computing: Techniques and …, 2015 | 6 | 2015 |
Automatic deep learning driven label-free image guided patch clamp system for human and rodent in vitro slice physiology K Koos, G Oláh, T Balassa, N Mihut, M Rózsa, A Ozsvár, E Tasnadi, ... bioRxiv, 2020.05. 05.078162, 2020 | 4 | 2020 |
Correlative Fluorescence and Raman Microscopy to Define Mitotic Stages at the Single-Cell Level: Opportunities and Limitations in the AI Era C Voros, D Bauer, E Migh, I Grexa, AG Végh, B Szalontai, G Castellani, ... Biosensors 13 (2), 187, 2023 | 3 | 2023 |
SpheroidPicker: An Automated 3D cell culture manipulator robot using deep learning G Istvan, D Akos, K Andras, M Nikita, H Maria, B Krisztina, P Vilja, ... bioRxiv, 2021 | 3 | 2021 |
Phase measurement using DIC microscopy K Koos, B Peksel, L Kelemen Acta Cybernetica 23 (2), 629-643, 2017 | 3 | 2017 |
SuperCUT, an unsupervised multimodal image registration with deep learning for biomedical microscopy I Grexa, ZZ Iván, E Migh, F Kovács, HA Bolck, X Zheng, A Mund, ... Briefings in Bioinformatics 25 (2), bbae029, 2024 | | 2024 |
Pipette Hunter 3D: Fluorescent Micropipette Detection D Hirling, K Koos, J Molnár, P Horvath Trends in Biomathematics: Modeling Cells, Flows, Epidemics, and the …, 2020 | | 2020 |