I-TASSER: a unified platform for automated protein structure and function prediction A Roy, A Kucukural, Y Zhang Nature protocols 5 (4), 725-738, 2010 | 7240 | 2010 |
Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals U Sharma, CC Conine, JM Shea, A Boskovic, AG Derr, XY Bing, ... Science 351 (6271), 391-396, 2016 | 1146 | 2016 |
Identification of Neuronal RNA Targets of TDP-43-containing Ribonucleoprotein Complexes*♦ CF Sephton, C Cenik, A Kucukural, EB Dammer, B Cenik, YH Han, ... Journal of biological chemistry 286 (2), 1204-1215, 2011 | 501 | 2011 |
The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus G Singh, A Kucukural, C Cenik, JD Leszyk, SA Shaffer, Z Weng, MJ Moore Cell 151 (4), 750-764, 2012 | 369 | 2012 |
Novel observations from next-generation RNA sequencing of highly purified human adult and fetal islet cell subsets DM Blodgett, A Nowosielska, S Afik, S Pechhold, AJ Cura, NJ Kennedy, ... Diabetes 64 (9), 3172-3181, 2015 | 310 | 2015 |
Simultaneous generation of many RNA-seq libraries in a single reaction AA Shishkin, G Giannoukos, A Kucukural, D Ciulla, M Busby, C Surka, ... Nature methods 12 (4), 323-325, 2015 | 275 | 2015 |
Ebola virus glycoprotein with increased infectivity dominated the 2013–2016 epidemic WE Diehl, AE Lin, ND Grubaugh, LM Carvalho, K Kim, PP Kyawe, ... Cell 167 (4), 1088-1098. e6, 2016 | 221 | 2016 |
DEBrowser: interactive differential expression analysis and visualization tool for count data A Kucukural, O Yukselen, DM Ozata, MJ Moore, M Garber BMC genomics 20, 1-12, 2019 | 216 | 2019 |
Genetic and epigenetic variation, but not diet, shape the sperm methylome JM Shea, RW Serra, BR Carone, HP Shulha, A Kucukural, MJ Ziller, ... Developmental cell 35 (6), 750-758, 2015 | 153 | 2015 |
Staufen1 senses overall transcript secondary structure to regulate translation EP Ricci, A Kucukural, C Cenik, BC Mercier, G Singh, EE Heyer, ... Nature structural & molecular biology 21 (1), 26-35, 2014 | 145 | 2014 |
Diverse repertoire of human adipocyte subtypes develops from transcriptionally distinct mesenchymal progenitor cells SY Min, A Desai, Z Yang, A Sharma, T DeSouza, RMJ Genga, ... Proceedings of the National Academy of Sciences 116 (36), 17970-17979, 2019 | 129 | 2019 |
HLA class II antigen processing and presentation pathway components demonstrated by transcriptome and protein analyses of islet β-cells from donors with type 1 diabetes MA Russell, SD Redick, DM Blodgett, SJ Richardson, P Leete, L Krogvold, ... Diabetes 68 (5), 988-1001, 2019 | 112 | 2019 |
DolphinNext: A distributed data processing platform for high throughput genomics O Yukselen, O Turkyilmaz, AR Ozturk, M Garber, A Kucukural BMC genomics 21, 1-16, 2020 | 90 | 2020 |
Dietary suppression of MHC class II expression in intestinal epithelial cells enhances intestinal tumorigenesis S Beyaz, C Chung, H Mou, KE Bauer-Rowe, ME Xifaras, I Ergin, ... Cell stem cell 28 (11), 1922-1935. e5, 2021 | 81 | 2021 |
An improved zebrafish transcriptome annotation for sensitive and comprehensive detection of cell type-specific genes ND Lawson, R Li, M Shin, A Grosse, O Yukselen, OA Stone, A Kucukural, ... Elife 9, e55792, 2020 | 78 | 2020 |
Evolutionarily conserved pachytene piRNA loci are highly divergent among modern humans DM Özata, T Yu, H Mou, I Gainetdinov, C Colpan, K Cecchini, Y Kaymaz, ... Nature ecology & evolution 4 (1), 156-168, 2020 | 73 | 2020 |
HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells Y Wang, L Lifshitz, K Gellatly, CL Vinton, K Busman-Sahay, S McCauley, ... Nature immunology 21 (3), 274-286, 2020 | 71 | 2020 |
An atlas of cell types in the mouse epididymis and vas deferens VD Rinaldi, E Donnard, K Gellatly, M Rasmussen, A Kucukural, ... elife 9, e55474, 2020 | 70 | 2020 |
AAV-delivered suppressor tRNA overcomes a nonsense mutation in mice J Wang, Y Zhang, CA Mendonca, O Yukselen, K Muneeruddin, L Ren, ... Nature 604 (7905), 343-348, 2022 | 65 | 2022 |
GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases LJ Zhu, M Lawrence, A Gupta, H Pagès, A Kucukural, M Garber, SA Wolfe BMC genomics 18, 1-10, 2017 | 50 | 2017 |