CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database BP Alcock, W Huynh, R Chalil, KW Smith, AR Raphenya, MA Wlodarski, ... Nucleic acids research 51 (D1), D690-D699, 2023 | 619 | 2023 |
Metagenome-assembled genome binning methods with short reads disproportionately fail for plasmids and genomic islands F Maguire, B Jia, KL Gray, WYV Lau, RG Beiko, FSL Brinkman Microbial genomics 6 (10), e000436, 2020 | 122 | 2020 |
PSORTdb 4.0: expanded and redesigned bacterial and archaeal protein subcellular localization database incorporating new secondary localizations WYV Lau, GR Hoad, V Jin, GL Winsor, A Madyan, KL Gray, MR Laird, ... Nucleic Acids Research 49 (D1), D803-D808, 2021 | 29 | 2021 |
Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks C Bertelli, KL Gray, N Woods, AC Lim, KE Tilley, GL Winsor, GR Hoad, ... Microbial genomics 8 (5), 000818, 2022 | 28 | 2022 |
PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data MA Peabody, WYV Lau, GR Hoad, B Jia, F Maguire, KL Gray, RG Beiko, ... Bioinformatics 36 (10), 3043-3048, 2020 | 15 | 2020 |
Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents H Sanderson, KL Gray, A Manuele, F Maguire, A Khan, C Liu, ... Microbial genomics 8 (9), 000880, 2022 | 13 | 2022 |
Curated Genomic Islands Database Supplementary Code Snapshot KL Gray, N Woods, N Kumpula, D Wong, M Glashutter, A Kwan, ... Resource 2023, 02-09, 2023 | | 2023 |
Supplementary data table for Chapter 5 of the thesis A population-based approach to genomic island analysis KL Gray Resource 2023, 02-09, 2023 | | 2023 |
IslandCompare CLI Tool Supplementary Code Snapshot KL Gray, N Woods, FSL Brinkman Resource 2023, 02-09, 2023 | | 2023 |
Supplementary code data files for the thesis A Population-Based Approach to Genomic Island Analysis KL Gray, C Bertelli, N Woods, AC Lim, KE Tilley, GL Winsor, GR Hoad, ... Simon Fraser University, 2023 | | 2023 |