Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women X Zhou, CJ Brown, Z Abdo, CC Davis, MA Hansmann, P Joyce, JA Foster, ... The ISME journal 1 (2), 121-133, 2007 | 684 | 2007 |
Model selection in phylogenetics J Sullivan, P Joyce Annu. Rev. Ecol. Evol. Syst. 36 (1), 445-466, 2005 | 514 | 2005 |
Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes Z Abdo, UME Schüette, SJ Bent, CJ Williams, LJ Forney, P Joyce Environmental microbiology 8 (5), 929-938, 2006 | 505 | 2006 |
Performance-based selection of likelihood models for phylogeny estimation V Minin, Z Abdo, P Joyce, J Sullivan Systematic biology 52 (5), 674-683, 2003 | 474 | 2003 |
Assessing allelic dropout and genotype reliability using maximum likelihood CR Miller, P Joyce, LP Waits Genetics 160 (1), 357-366, 2002 | 433 | 2002 |
A new method for estimating the size of small populations from genetic mark–recapture data CR Miller, P Joyce, LP Waits Molecular ecology 14 (7), 1991-2005, 2005 | 373 | 2005 |
Approximately sufficient statistics and Bayesian computation P Joyce, P Marjoram Statistical applications in genetics and molecular biology 7 (1), 2008 | 321 | 2008 |
Stability of a promiscuous plasmid in different hosts: no guarantee for a long-term relationship L De Gelder, JM Ponciano, P Joyce, EM Top Microbiology 153 (2), 452-463, 2007 | 270 | 2007 |
A novel comparative method for identifying shifts in the rate of character evolution on trees JM Eastman, ME Alfaro, P Joyce, AL Hipp, LJ Harmon Evolution 65 (12), 3578-3589, 2011 | 262 | 2011 |
An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus DR Rokyta, P Joyce, SB Caudle, HA Wichman Nature genetics 37 (4), 441-444, 2005 | 203 | 2005 |
Efficient use of animal manure on cropland–economic analysis AA Araji, ZO Abdo, P Joyce Bioresource technology 79 (2), 179-191, 2001 | 146 | 2001 |
Evaluating the performance of a successive-approximations approach to parameter optimization in maximum-likelihood phylogeny estimation J Sullivan, Z Abdo, P Joyce, DL Swofford Molecular Biology and Evolution 22 (6), 1386-1392, 2005 | 137 | 2005 |
Beneficial fitness effects are not exponential for two viruses DR Rokyta, CJ Beisel, P Joyce, MT Ferris, CL Burch, HA Wichman Journal of molecular evolution 67, 368-376, 2008 | 127 | 2008 |
Mutational effects and population dynamics during viral adaptation challenge current models CR Miller, P Joyce, HA Wichman Genetics 187 (1), 185-202, 2011 | 101 | 2011 |
Epistasis between beneficial mutations and the phenotype-to-fitness map for a ssDNA virus DR Rokyta, P Joyce, SB Caudle, C Miller, CJ Beisel, HA Wichman PLoS genetics 7 (6), e1002075, 2011 | 99 | 2011 |
Categorization of microbial communities LJ Forney, J Foster, C Brown, P Joyce, Z Abdo, A Johnson, X Zhou US Patent 7,627,437, 2009 | 98* | 2009 |
A general extreme value theory model for the adaptation of DNA sequences under strong selection and weak mutation P Joyce, DR Rokyta, CJ Beisel, HA Orr Genetics 180 (3), 1627-1643, 2008 | 98 | 2008 |
High frequency of mutations that expand the host range of an RNA virus MT Ferris, P Joyce, CL Burch Genetics 176 (2), 1013-1022, 2007 | 95 | 2007 |
Accounting for uncertainty in the tree topology has little effect on the decision-theoretic approach to model selection in phylogeny estimation Z Abdo, VN Minin, P Joyce, J Sullivan Molecular Biology and Evolution 22 (3), 691-703, 2005 | 93 | 2005 |
Combining mathematical models and statistical methods to understand and predict the dynamics of antibiotic-sensitive mutants in a population of resistant bacteria during … L De Gelder, JM Ponciano, Z Abdo, P Joyce, LJ Forney, EM Top Genetics 168 (3), 1131-1144, 2004 | 92 | 2004 |