JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ... Nucleic acids research 46 (D1), D260-D266, 2018 | 1647 | 2018 |
TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information SR Kulkarni, D Vaneechoutte, J Van de Velde, K Vandepoele Nucleic acids research 46 (6), e31-e31, 2018 | 129 | 2018 |
Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development J Van Leene, J Blomme, SR Kulkarni, B Cannoot, N De Winne, ... Journal of experimental botany, erw347, 2016 | 86 | 2016 |
A spatial vascular transcriptomic, proteomic, and phosphoproteomic atlas unveils an angiocrine Tie–Wnt signaling axis in the liver D Inverso, J Shi, KH Lee, M Jakab, S Ben-Moshe, SR Kulkarni, ... Developmental cell 56 (11), 1677-1693. e10, 2021 | 70 | 2021 |
Temporal multi-omics identifies LRG1 as a vascular niche instructor of metastasis M Singhal, N Gengenbacher, AA Abdul Pari, M Kamiyama, L Hai, ... Science translational medicine 13 (609), eabe6805, 2021 | 45 | 2021 |
Inference of plant gene regulatory networks using data-driven methods: A practical overview SR Kulkarni, K Vandepoele Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1863 (6), 194447, 2020 | 32 | 2020 |
Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth J Vercruysse, M Van Bel, CM Osuna‐Cruz, SR Kulkarni, V Storme, ... Plant biotechnology journal 18 (2), 553-567, 2020 | 28 | 2020 |
Enhanced maps of transcription factor binding sites improve regulatory networks learned from accessible chromatin data SR Kulkarni, DM Jones, K Vandepoele Plant physiology 181 (2), 412-425, 2019 | 26 | 2019 |
GSyellow, a Multifaceted Tag for Functional Protein Analysis in Monocot and Dicot Plants N Besbrugge, J Van Leene, D Eeckhout, B Cannoot, SR Kulkarni, ... Plant Physiology 177 (2), 447-464, 2018 | 25 | 2018 |
Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa) K De Schutter, M Tsaneva, SR Kulkarni, P Rougé, K Vandepoele, ... Rice 10, 1-19, 2017 | 22 | 2017 |
Lung endothelium exploits susceptible tumor cell states to instruct metastatic latency M Jakab, KH Lee, A Uvarovskii, S Ovchinnikova, SR Kulkarni, S Jakab, ... Nature Cancer, 1-15, 2024 | 4 | 2024 |
Lung endothelium instructs dormancy of susceptible metastatic tumour cells M Jakab, KH Lee, A Uvarovskii, S Ovchinnikova, SR Kulkarni, T Rostalski, ... bioRxiv, 2022.06. 18.496680, 2022 | 3 | 2022 |
ANAC102 predominantly expresses a nuclear protein and acts as a negative regulator of methyl viologen-induced retrograde signaling X Luo, X Jiang, V Schmitt, SR Kulkarni, HC Tran, SM Kacprzak, ... Journal of Experimental Botany, erae235, 2024 | 1 | 2024 |
Concerted action of miRNA targets enables defense reprogramming upon pathogen-induced RNA silencing L Villar-Martín, S Kulkarni, C Cáceres-Moreno, T Jiménez-Gongora, ... | | 2022 |
Enhanced TF binding site maps improve regulatory networks learned from accessible chromatin data SR Kulkarni, DM Jones, K Vandepoele bioRxiv, 545780, 2019 | | 2019 |
Delineating gene regulatory networks in Arabidopsis thaliana SR Kulkarni Ghent University, 2019 | | 2019 |
Erratum. JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework R van der Lee, B Ballester, F Parcy, A Khan, O Fornés, A Stigliani, ... | | 2018 |
AUTHOR CONTRIBUTIONS SR Kulkarni, DM Jones, K Vandepoele | | |