Linking the Transcriptional Profiles and the Physiological States of Mycobacterium tuberculosis during an Extended Intracellular Infection KH Rohde, DFT Veiga, S Caldwell, G Balázsi, DG Russell PLoS pathogens 8 (6), e1002769, 2012 | 295 | 2012 |
A CD4+ T cell population expanded in lupus blood provides B cell help through interleukin-10 and succinate S Caielli, DT Veiga, P Balasubramanian, S Athale, B Domic, E Murat, ... Nature medicine 25 (1), 75-81, 2019 | 227 | 2019 |
Genome-wide discovery of small RNAs in Mycobacterium tuberculosis P Miotto, F Forti, A Ambrosi, D Pellin, DF Veiga, G Balazsi, ML Gennaro, ... PLoS one 7 (12), e51950, 2012 | 99 | 2012 |
SCL, LMO1 and Notch1 Reprogram Thymocytes into Self-Renewing Cells B Gerby, CS Tremblay, M Tremblay, S Rojas-Sutterlin, S Herblot, J Hébert, ... PLoS genetics 10 (12), e1004768, 2014 | 80 | 2014 |
Network inference and network response identification: moving genome-scale data to the next level of biological discovery DFT Veiga, B Dutta, G Balázsi Molecular BioSystems 6 (3), 469-480, 2010 | 53 | 2010 |
A semantic web management model for integrative biomedical informatics HF Deus, R Stanislaus, DF Veiga, C Behrens, II Wistuba, JD Minna, ... PloS one 3 (8), e2946, 2008 | 44 | 2008 |
Exposing the cancer genome atlas as a SPARQL endpoint HF Deus, DF Veiga, PR Freire, JN Weinstein, GB Mills, JS Almeida Journal of biomedical informatics 43 (6), 998-1008, 2010 | 41 | 2010 |
High-throughput screening in niche-based assay identifies compounds to target preleukemic stem cells B Gerby, DFT Veiga, J Krosl, S Nourreddine, J Ouellette, A Haman, ... The Journal of Clinical Investigation 126 (12), 4569-4584, 2016 | 39 | 2016 |
The LMO2 oncogene regulates DNA replication in hematopoietic cells MC Sincennes, M Humbert, B Grondin, V Lisi, DFT Veiga, A Haman, ... Proceedings of the National Academy of Sciences 113 (5), 1393-1398, 2016 | 37 | 2016 |
A comprehensive long-read isoform analysis platform and sequencing resource for breast cancer DFT Veiga, A Nesta, Y Zhao, AD Mays, R Huynh, R Rossi, TC Wu, ... Science Advances 8 (3), eabg6711, 2022 | 36 | 2022 |
Inhibition of mitochondrial complex I reverses NOTCH1-driven metabolic reprogramming in T-cell acute lymphoblastic leukemia N Baran, A Lodi, Y Dhungana, S Herbrich, M Collins, S Sweeney, ... Nature communications 13 (1), 2801, 2022 | 30 | 2022 |
Ribonuclease inhibitor 1 regulates erythropoiesis by controlling GATA1 translation V Chennupati, DFT Veiga, KM Maslowski, N Andina, A Tardivel, ECW Yu, ... The Journal of clinical investigation 128 (4), 1597-1614, 2018 | 28 | 2018 |
Multi‐omics analysis suggests enhanced epileptogenesis in the Cornu Ammonis 3 of the pilocarpine model of mesial temporal lobe epilepsy AM Canto, AHB Matos, AB Godoi, AS Vieira, BB Aoyama, CS Rocha, ... Hippocampus 31 (2), 122-139, 2021 | 25 | 2021 |
Genome-wide partial correlation analysis of Escherichia coli microarray data DFT Veiga, FFR Vicente, M Grivet, A De la Fuente, ATR Vasconcelos Genet Mol Res 6 (4), 730-42, 2007 | 25 | 2007 |
The impact of biological sex on alternative splicing G Karlebach, DFT Veiga, AD Mays, C Chatzipantsiou, PP Barja, ... BioRxiv, 490904, 2018 | 18 | 2018 |
maser: Mapping Alternative Splicing Events to pRoteins DFT Veiga R package version 1 (0), 2022 | 13 | 2022 |
Predicting transcriptional regulatory interactions with artificial neural networks applied to E. coli multidrug resistance efflux pumps DFT Veiga, FFR Vicente, MF Nicolás, ATR Vasconcelos BMC microbiology 8, 1-14, 2008 | 11 | 2008 |
Benchmarking the proteomic profile of animal models of mesial temporal epilepsy AM Canto, AB Godoi, AHB Matos, JC Geraldis, F Rogerio, MKM Alvim, ... Annals of Clinical and Translational Neurology 9 (4), 454-467, 2022 | 10 | 2022 |
HBA-DEALS: accurate and simultaneous identification of differential expression and splicing using hierarchical Bayesian analysis G Karlebach, P Hansen, DFT Veiga, R Steinhaus, D Danis, S Li, ... Genome biology 21, 1-20, 2020 | 8 | 2020 |
Gene networks as a tool to understand transcriptional regulation DF Veiga, FF Vicente, G Bastos Genet. Mol. Res 5 (1), 254-268, 2006 | 8 | 2006 |