Harnessing protein folding neural networks for peptide–protein docking T Tsaban, JK Varga, O Avraham, Z Ben-Aharon, A Khramushin, ... Nature communications 13 (1), 176, 2022 | 187 | 2022 |
Identification of extracellular segments by mass spectrometry improves topology prediction of transmembrane proteins T Langó, G Róna, É Hunyadi-Gulyás, L Turiák, J Varga, L Dobson, ... Scientific Reports 7 (1), 42610, 2017 | 18 | 2017 |
Matching protein surface structural patches for high-resolution blind peptide docking A Khramushin, Z Ben-Aharon, T Tsaban, JK Varga, O Avraham, ... Proceedings of the National Academy of Sciences 119 (18), e2121153119, 2022 | 16* | 2022 |
TSTMP: target selection for structural genomics of human transmembrane proteins J Varga, L Dobson, I Reményi, GE Tusnády Nucleic Acids Research 45 (D1), D325-D330, 2017 | 16 | 2017 |
TMCrys: predict propensity of success for transmembrane protein crystallization JK Varga, GE Tusnady Bioinformatics 34 (18), 3126-3130, 2018 | 14 | 2018 |
A method for characterizing Cas9 variants via a one-million target sequence library of self-targeting sgRNAs A Tálas, K Huszár, PI Kulcsár, JK Varga, É Varga, E Tóth, Z Welker, ... Nucleic Acids Research 49 (6), e31-e31, 2021 | 12 | 2021 |
Systematic discovery of protein interaction interfaces using AlphaFold and experimental validation CY Lee, D Hubrich, JK Varga, C Schäfer, M Welzel, E Schumbera, ... Molecular Systems Biology 20 (2), 75-97, 2024 | 11 | 2024 |
Structure-based prediction of HDAC6 substrates validated by enzymatic assay reveals determinants of promiscuity and detects new potential substrates JK Varga, K Diffley, KR Welker Leng, CA Fierke, O Schueler-Furman Scientific reports 12 (1), 1-15, 2022 | 9 | 2022 |
Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study H Schweke, Q Xu, G Tauriello, L Pantolini, T Schwede, F Cazals, ... Proteomics 23 (17), 2200323, 2023 | 8 | 2023 |
TOPDOM: database of conservatively located domains and motifs in proteins J Varga, L Dobson, GE Tusnády Bioinformatics 32 (17), 2725-2726, 2016 | 7 | 2016 |
Structural study of UFL1‐UFC1 interaction uncovers the role of UFL1 N‐terminal helix in ufmylation S Banerjee, JK Varga, M Kumar, G Zoltsman, S Rotem‐Bamberger, ... EMBO reports 24 (12), e56920, 2023 | 5 | 2023 |
Partial proteolysis improves the identification of the extracellular segments of transmembrane proteins by surface biotinylation T Langó, ZG Pataki, L Turiák, A Ács, JK Varga, G Várady, N Kucsma, ... Scientific Reports 10 (1), 1-11, 2020 | 4 | 2020 |
Unbiased phenotype and genotype matching maximizes gene discovery and diagnostic yield J Rips, O Halstuk, A Fuchs, Z Lang, T Sido, S Gershon-Naamat, ... Genetics in Medicine 26 (4), 101068, 2024 | 2 | 2024 |
The TMCrys server for supporting crystallization of transmembrane proteins JK Varga, GE Tusnády Bioinformatics 35 (20), 4203-4204, 2019 | 2 | 2019 |
Substrate recognition principles for the PP2A-B55 protein phosphatase T Kruse, DH Garvanska, J Varga, W Garland, B McEwan, JB Hein, ... bioRxiv, 2024 | 1 | 2024 |
Binding of SARS-CoV-2 nucleocapsid protein to uninfected epithelial cells induces antibody-mediated complement deposition J Fahoum, M Billan, JK Varga, D Padawer, M Elgrably-Weiss, P Basu, ... bioRxiv, 2024.03. 17.585388, 2024 | | 2024 |
Who Binds Better? Let Alphafold2 Decide! JK Varga, O Schueler‐Furman Angewandte Chemie 135 (28), e202303526, 2023 | | 2023 |