ESpritz: accurate and fast prediction of protein disorder I Walsh, AJM Martin, T Di Domenico, SCE Tosatto Bioinformatics 28 (4), 503-509, 2012 | 518 | 2012 |
MobiDB: a comprehensive database of intrinsic protein disorder annotations T Di Domenico, I Walsh, AJM Martin, SCE Tosatto Bioinformatics 28 (15), 2080-2081, 2012 | 162 | 2012 |
Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information G Pollastri, AJM Martin, C Mooney, A Vullo BMC bioinformatics 8, 1-12, 2007 | 158 | 2007 |
RING: networking interacting residues, evolutionary information and energetics in protein structures AJM Martin, M Vidotto, F Boscariol, T Di Domenico, I Walsh, SCE Tosatto Bioinformatics 27 (14), 2003-2005, 2011 | 146 | 2011 |
NeEMO: a method using residue interaction networks to improve prediction of protein stability upon mutation M Giollo, AJM Martin, I Walsh, C Ferrari, SCE Tosatto BMC genomics 15, 1-11, 2014 | 119 | 2014 |
Distill: a suite of web servers for the prediction of one-, two-and three-dimensional structural features of proteins D Baú, AJM Martin, C Mooney, A Vullo, I Walsh, G Pollastri BMC bioinformatics 7, 1-8, 2006 | 111 | 2006 |
CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs I Walsh, AJM Martin, T Di Domenico, A Vullo, G Pollastri, SCE Tosatto Nucleic acids research 39 (suppl_2), W190-W196, 2011 | 110 | 2011 |
Fly cryptochrome and the visual system G Mazzotta, A Rossi, E Leonardi, M Mason, C Bertolucci, L Caccin, ... Proceedings of the National Academy of Sciences 110 (15), 6163-6168, 2013 | 76 | 2013 |
Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks I Walsh, D Baù, AJM Martin, C Mooney, A Vullo, G Pollastri BMC structural biology 9, 1-20, 2009 | 65 | 2009 |
An integrated molecular dynamics, principal component analysis and residue interaction network approach reveals the impact of M184V mutation on HIV reverse transcriptase … S Bhakat, AJM Martin, MES Soliman Molecular BioSystems 10 (8), 2215-2228, 2014 | 59 | 2014 |
RIP-MD: a tool to study residue interaction networks in protein molecular dynamics S Contreras-Riquelme, JA Garate, T Perez-Acle, AJM Martin PeerJ 6, e5998, 2018 | 46 | 2018 |
MOBI: a web server to define and visualize structural mobility in NMR protein ensembles AJM Martin, I Walsh, SCE Tosatto Bioinformatics 26 (22), 2916-2917, 2010 | 46 | 2010 |
Multi-drug resistance profile of PR20 HIV-1 protease is attributed to distorted conformational and drug binding landscape: molecular dynamics insights S Chetty, S Bhakat, AJM Martin, MES Soliman Journal of Biomolecular Structure and Dynamics 34 (1), 135-151, 2016 | 35 | 2016 |
Modeling approaches for probing cross-feeding interactions in the human gut microbiome P Saa, A Urrutia, C Silva-Andrade, AJ Martín, D Garrido Computational and Structural Biotechnology Journal 20, 79-89, 2022 | 31 | 2022 |
Enforced dimerization between XBP1s and ATF6f enhances the protective effects of the UPR in models of neurodegeneration RL Vidal, D Sepulveda, P Troncoso-Escudero, P Garcia-Huerta, ... Molecular Therapy 29 (5), 1862-1882, 2021 | 26 | 2021 |
Graphlet Based Metrics for the Comparison of Gene Regulatory Networks AJM Martin, C Dominguez, S Contreras-Riquelme, DS Holmes, ... PLoS ONE 11 (10), e0163497, 2016 | 24 | 2016 |
Ab initio and homology based prediction of protein domains by recursive neural networks I Walsh, AJM Martin, C Mooney, E Rubagotti, A Vullo, G Pollastri BMC bioinformatics 10, 1-19, 2009 | 24 | 2009 |
On biophysical properties and sensitivity to gap junction blockers of connexin 39 hemichannels expressed in HeLa cells AA Vargas, BA Cisterna, F Saavedra-Leiva, C Urrutia, LA Cea, AH Vielma, ... Frontiers in Physiology 8, 38, 2017 | 20 | 2017 |
Stochastic simulation of multiscale complex systems with PISKaS: A rule-based approach T Perez-Acle, I Fuenzalida, AJM Martin, R Santibañez, R Avaria, ... Biochemical and biophysical research communications 498 (2), 342-351, 2018 | 12 | 2018 |
PANADA: protein association network annotation, determination and analysis AJM Martin, I Walsh, TD Domenico, I Mičetić, SCE Tosatto PLoS One 8 (11), e78383, 2013 | 12 | 2013 |