| ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules A Leaver-Fay, M Tyka, SM Lewis, OF Lange, J Thompson, R Jacak, ... Methods in enzymology 487, 545-574, 2011 | 1970 | 2011 |
| Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: four approaches that performed well in CASP8 E Krieger, K Joo, J Lee, J Lee, S Raman, J Thompson, M Tyka, D Baker, ... Proteins: Structure, Function, and Bioinformatics 77 (S9), 114-122, 2009 | 1444 | 2009 |
| High-resolution comparative modeling with RosettaCM Y Song, F DiMaio, RYR Wang, D Kim, C Miles, TJ Brunette, J Thompson, ... Structure 21 (10), 1735-1742, 2013 | 1159 | 2013 |
| Crystal structure of a monomeric retroviral protease solved by protein folding game players F Khatib, F DiMaio, Foldit Contenders Group, Foldit Void Crushers Group, ... Nature structural & molecular biology 18 (10), 1175-1177, 2011 | 673 | 2011 |
| Structure prediction for CASP8 with all‐atom refinement using Rosetta S Raman, R Vernon, J Thompson, M Tyka, R Sadreyev, J Pei, D Kim, ... Proteins: Structure, Function, and Bioinformatics 77 (S9), 89-99, 2009 | 595 | 2009 |
| Structure prediction for CASP7 targets using extensive all‐atom refinement with Rosetta@ home R Das, B Qian, S Raman, R Vernon, J Thompson, P Bradley, S Khare, ... Proteins: Structure, Function, and Bioinformatics 69 (S8), 118-128, 2007 | 276 | 2007 |
| Scientific benchmarks for guiding macromolecular energy function improvement A Leaver-Fay, MJ O'meara, M Tyka, R Jacak, Y Song, EH Kellogg, ... Methods in enzymology 523, 109-143, 2013 | 243 | 2013 |
| The experience of illness R Fitzpatrick, J Hinton, S Newman, G Scambler, J Thompson Routledge, 1984 | 135 | 1984 |
| Five novel loci for inherited hearing loss mapped by SNP-based homozygosity profiles in Palestinian families H Shahin, T Walsh, AA Rayyan, MK Lee, J Higgins, D Dickel, K Lewis, ... European Journal of Human Genetics 18 (4), 407-413, 2010 | 103 | 2010 |
| Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway WS Mak, S Tran, R Marcheschi, S Bertolani, J Thompson, D Baker, ... Nature communications 6 (1), 10005, 2015 | 94 | 2015 |
| High-resolution μCT of a mouse embryo using a compact laser-driven X-ray betatron source JM Cole, DR Symes, NC Lopes, JC Wood, K Poder, S Alatabi, ... Proceedings of the National Academy of Sciences 115 (25), 6335-6340, 2018 | 72 | 2018 |
| Structure‐guided forcefield optimization Y Song, M Tyka, A Leaver‐Fay, J Thompson, D Baker Proteins: Structure, Function, and Bioinformatics 79 (6), 1898-1909, 2011 | 66 | 2011 |
| Incorporation of evolutionary information into Rosetta comparative modeling J Thompson, D Baker Proteins: Structure, Function, and Bioinformatics 79 (8), 2380-2388, 2011 | 59 | 2011 |
| Accurate protein structure modeling using sparse NMR data and homologous structure information JM Thompson, NG Sgourakis, G Liu, P Rossi, Y Tang, JL Mills, ... Proceedings of the National Academy of Sciences 109 (25), 9875-9880, 2012 | 52 | 2012 |
| APOBEC2 is a monomer in solution: implications for APOBEC3G models TC Krzysiak, J Jung, J Thompson, D Baker, AM Gronenborn Biochemistry 51 (9), 2008-2017, 2012 | 42 | 2012 |
| Genetic algorithm learning as a robust approach to RNA editing site prediction J Thompson, S Gopal BMC bioinformatics 7, 1-12, 2006 | 38 | 2006 |
| Janus: prediction and ranking of mutations required for functional interconversion of enzymes TA Addington, RW Mertz, JB Siegel, JM Thompson, AJ Fisher, V Filkov, ... Journal of molecular biology 425 (8), 1378-1389, 2013 | 35 | 2013 |
| High-resolution structure of a retroviral protease folded as a monomer M Gilski, M Kazmierczyk, S Krzywda, H Zábranská, S Cooper, Z Popović, ... Acta Crystallographica Section D: Biological Crystallography 67 (11), 907-914, 2011 | 32 | 2011 |
| Phylogenetic fate mapping: theoretical and experimental studies applied to the development of mouse fibroblasts SJ Salipante, JM Thompson, MS Horwitz Genetics 178 (2), 967-977, 2008 | 30 | 2008 |
| Rosetta in CAPRI rounds 13–19 SJ Fleishman, JE Corn, EM Strauch, TA Whitehead, I Andre, J Thompson, ... Proteins: Structure, Function, and Bioinformatics 78 (15), 3212-3218, 2010 | 23 | 2010 |
