| iRegulon: from a gene list to a gene regulatory network using large motif and track collections R Janky, A Verfaillie, H Imrichová, B Van de Sande, L Standaert, ... PLoS computational biology 10 (7), e1003731, 2014 | 815 | 2014 |
| Alteration of the micro RNA network during the progression of Alzheimer's disease P Lau, K Bossers, R Janky, E Salta, CS Frigerio, S Barbash, R Rothman, ... EMBO molecular medicine 5 (10), 1613-1634, 2013 | 495 | 2013 |
| C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression J Reboul, P Vaglio, JF Rual, P Lamesch, M Martinez, CM Armstrong, S Li, ... Nature genetics 34 (1), 35-41, 2003 | 446 | 2003 |
| RSAT: regulatory sequence analysis tools M Thomas-Chollier, O Sand, JV Turatsinze, R Janky, M Defrance, ... Nucleic acids research 36 (suppl_2), W119-W127, 2008 | 336 | 2008 |
| Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation T Chandra, K Kirschner, JY Thuret, BD Pope, T Ryba, S Newman, ... Molecular cell 47 (2), 203-214, 2012 | 307 | 2012 |
| Prognostic relevance of molecular subtypes and master regulators in pancreatic ductal adenocarcinoma R Janky, MM Binda, J Allemeersch, A Van den Broeck, O Govaere, ... BMC cancer 16, 1-15, 2016 | 151 | 2016 |
| The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development NK Wilson, D Miranda-Saavedra, S Kinston, N Bonadies, SD Foster, ... Blood, The Journal of the American Society of Hematology 113 (22), 5456-5465, 2009 | 150 | 2009 |
| NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways S Brohee, K Faust, G Lima-Mendez, O Sand, R Janky, G Vanderstocken, ... Nucleic acids research 36 (suppl_2), W444-W451, 2008 | 124 | 2008 |
| The aMAZE LightBench: a web interface to a relational database of cellular processes C Lemer, E Antezana, F Couche, F Fays, X Santolaria, R Janky, Y Deville, ... Nucleic Acids Research 32 (suppl_1), D443-D448, 2004 | 93 | 2004 |
| Using RSAT oligo-analysis and dyad-analysis tools to discover regulatory signals in nucleic sequences M Defrance, R Janky, O Sand, J Van Helden Nature protocols 3 (10), 1589-1603, 2008 | 64 | 2008 |
| Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution R Janky, J Van Helden BMC bioinformatics 9, 1-26, 2008 | 58 | 2008 |
| iRegulon and i‐cisTarget: reconstructing regulatory networks using motif and track enrichment A Verfaillie, H Imrichova, R Janky, S Aerts Current protocols in bioinformatics 52 (1), 2.16. 1-2.16. 39, 2015 | 40 | 2015 |
| Unraveling networks of co-regulated genes on the sole basis of genome sequences S Brohée, R Janky, F Abdel-Sater, G Vanderstocken, B Andre, ... Nucleic acids research 39 (15), 6340-6358, 2011 | 40 | 2011 |
| Dysregulation of macropinocytosis processes in glioblastomas may be exploited to increase intracellular anti-cancer drug levels: the example of temozolomide M Colin, C Delporte, R Janky, AS Lechon, G Renard, P Van Antwerpen, ... Cancers 11 (3), 411, 2019 | 30 | 2019 |
| FUS-ALS hiPSC-derived astrocytes impair human motor units through both gain-of-toxicity and loss-of-support mechanisms K Stoklund Dittlau, L Terrie, P Baatsen, A Kerstens, L De Swert, R Janky, ... Molecular Neurodegeneration 18 (1), 5, 2023 | 29 | 2023 |
| p53 shapes genome-wide and cell type-specific changes in microRNA expression during the human DNA damage response H Hattori, R Janky, W Nietfeld, S Aerts, M Madan Babu, AR Venkitaraman Cell Cycle 13 (16), 2572-2586, 2014 | 22 | 2014 |
| CRISPR/Cas9 screen in human iPSC‐derived cortical neurons identifies NEK6 as a novel disease modifier of C9orf72 poly(PR) toxicity W Guo, H Wang, A Kumar Tharkeshwar, J Couthouis, E Braems, ... Alzheimer's & Dementia 19 (4), 1245-1259, 2023 | 14 | 2023 |
| Investigating transcriptional regulation: from analysis of complex networks to discovery of cis-regulatory elements R Janky, J Van Helden, MM Babu Methods 48 (3), 277-286, 2009 | 14 | 2009 |
| Discovery of conserved motifs in promoters of orthologous genes in prokaryotes R Janky, J Helden Comparative Genomics, 293-308, 2008 | 14 | 2008 |
| The bacterial quorum sensing peptide iAM373 is a novel inducer of sarcopenia A De Spiegeleer, E Wynendaele, A Descamps, N Debunne, ... Clinical and Translational Medicine 12 (10), e1053, 2022 | 10 | 2022 |
