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Patrick K. Quoika
Patrick K. Quoika
Postdoctoral Researcher, Theoretical Biophysics, Technical University of Munich
在 tum.de 的电子邮件经过验证
标题
引用次数
引用次数
年份
Coil–Globule Transition Thermodynamics of Poly(N-isopropylacrylamide)
M Podewitz, Y Wang, PK Quoika, JR Loeffler, M Schauperl, KR Liedl
The Journal of Physical Chemistry B 123 (41), 8838-8847, 2019
612019
Quantifying Protein–Protein Interactions in Molecular Simulations
A Jost Lopez, PK Quoika, M Linke, G Hummer, J Köfinger
The Journal of Physical Chemistry B 124 (23), 4673-4685, 2020
402020
Challenges in antibody structure prediction
ML Fernández-Quintero, J Kokot, F Waibl, ALM Fischer, PK Quoika, ...
Mabs 15 (1), 2175319, 2023
242023
Macrocycle Cell Permeability Measured by Solvation Free Energies in Polar and Apolar Environments
AS Kamenik, J Kraml, F Hofer, F Waibl, PK Quoika, U Kahler, M Schauperl, ...
Journal of chemical information and modeling 60 (7), 3508-3517, 2020
212020
Surprisingly fast interface and elbow angle dynamics of antigen-binding fragments
ML Fernández-Quintero, KB Kröll, MC Heiss, JR Loeffler, PK Quoika, ...
Frontiers in Molecular Biosciences 7, 339, 2020
192020
X-Entropy: A Parallelized Kernel Density Estimator with Automated Bandwidth Selection to Calculate Entropy
J Kraml, F Hofer, PK Quoika, AS Kamenik, KR Liedl
Journal of Chemical Information and Modeling 61 (4), 1533-1538, 2021
182021
Germline-Dependent Antibody Paratope States and Pairing Specific VH-VL Interface Dynamics
ML Fernández-Quintero, KB Kroell, LM Bacher, JR Loeffler, PK Quoika, ...
Frontiers in Immunology 12, 675655, 2021
162021
pyPolyBuilder: Automated Preparation of Molecular Topologies and Initial Configurations for Molecular Dynamics Simulations of Arbitrary Supramolecules
MC Ramos, PK Quoika, VAC Horta, DM Dias, EG Costa, JLM do Amaral, ...
Journal of Chemical Information and Modeling 61 (4), 1539-1544, 2021
132021
Thermosensitive Hydration of Four Acrylamide-Based Polymers in Coil and Globule Conformations
PK Quoika, M Podewitz, Y Wang, AS Kamenik, JR Loeffler, KR Liedl
The Journal of Physical Chemistry B 124 (43), 9745-9756, 2020
122020
Shark Antibody Variable Domains Rigidify Upon Affinity Maturation—Understanding the Potential of Shark Immunoglobulins as Therapeutics
ML Fernández-Quintero, CA Seidler, PK Quoika, KR Liedl
Frontiers in molecular biosciences 8, 639166, 2021
102021
Comparing antibody interfaces to inform rational design of new antibody formats
ML Fernández-Quintero, PK Quoika, FS Wedl, CA Seidler, KB Kroell, ...
Frontiers in Molecular Biosciences 9, 812750, 2022
62022
Water model determines thermosensitive and physicochemical properties of poly (N-isopropylacrylamide) in molecular simulations
PK Quoika, AS Kamenik, ML Fernández-Quintero, M Zacharias, KR Liedl
Frontiers in Materials 10, 1005781, 2023
42023
Increase of Radiative Forcing through Midinfrared Absorption by Stable CO2 Dimers?
DF Dinu, P Bartl, PK Quoika, M Podewitz, KR Liedl, H Grothe, T Loerting
The Journal of Physical Chemistry A 126 (19), 2966-2975, 2022
42022
Implementation of the Freely Jointed Chain Model to Assess Kinetics and Thermodynamics of Thermosensitive Coil–Globule Transition by Markov States
PK Quoika, ML Fernández-Quintero, M Podewitz, F Hofer, KR Liedl
The Journal of Physical Chemistry B 125 (18), 4898-4909, 2021
42021
The Role of Force Fields and Water Models in Protein Folding and Unfolding Dynamics
ALM Fischer, A Tichy, J Kokot, VJ Hoerschinger, RF Wild, JR Riccabona, ...
Journal of Chemical Theory and Computation 20 (5), 2321-2333, 2024
32024
Structural mechanism of Fab domain dissociation as a measure of interface stability
ND Pomarici, F Waibl, PK Quoika, A Bujotzek, G Georges, ...
Journal of Computer-Aided Molecular Design 37 (4), 201-215, 2023
32023
Complexes++: Efficient and versatile coarse-grained simulations of protein complexes and their dense solutions
M Linke, PK Quoika, B Bramas, J Köfinger, G Hummer
The Journal of Chemical Physics 157 (20), 2022
32022
Bispecific antibodies—effects of point mutations on CH3-CH3 interface stability
ND Pomarici, ML Fernández-Quintero, PK Quoika, F Waibl, A Bujotzek, ...
Protein Engineering, Design and Selection 35, gzac012, 2022
32022
Conformational shifts of stacked heteroaromatics: vacuum vs. water studied by machine learning
JR Loeffler, ML Fernández-Quintero, F Waibl, PK Quoika, F Hofer, ...
Frontiers in Chemistry 9, 641610, 2021
32021
Liquid–Vapor Coexistence and Spontaneous Evaporation at Atmospheric Pressure of Common Rigid Three-Point Water Models in Molecular Simulations
PK Quoika, M Zacharias
The Journal of Physical Chemistry B 128 (10), 2457-2468, 2024
12024
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