iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data Z Chen, P Zhao, F Li, TT Marquez-Lago, A Leier, J Revote, Y Zhu, ... Briefings in bioinformatics 21 (3), 1047-1057, 2020 | 269 | 2020 |
Discovery of a super-strong promoter enables efficient production of heterologous proteins in cyanobacteria J Zhou, H Zhang, H Meng, Y Zhu, G Bao, Y Zhang, Y Li, Y Ma Scientific reports 4 (1), 4500, 2014 | 168 | 2014 |
Proteome Reference Map and Comparative Proteomic Analysis between a Wild Type Clostridium acetobutylicum DSM 1731 and its Mutant with Enhanced Butanol … S Mao, Y Luo, T Zhang, J Li, G Bao, Y Zhu, Z Chen, Y Zhang, Y Li, Y Ma Journal of proteome research 9 (6), 3046-3061, 2010 | 149 | 2010 |
Formic acid triggers the “Acid Crash” of acetone-butanol-ethanol fermentation by Clostridium acetobutylicum S Wang, Y Zhang, H Dong, S Mao, Y Zhu, R Wang, G Luan, Y Li Applied and environmental microbiology 77 (5), 1674-1680, 2011 | 141 | 2011 |
The importance of engineering physiological functionality into microbes Y Zhang, Y Zhu, Y Zhu, Y Li Trends in biotechnology 27 (12), 664-672, 2009 | 93 | 2009 |
Antimicrobial peptides: An update on classifications and databases A Bin Hafeez, X Jiang, PJ Bergen, Y Zhu International journal of molecular sciences 22 (21), 11691, 2021 | 83 | 2021 |
Understanding the industrial application potential of lactic acid bacteria through genomics Y Zhu, Y Zhang, Y Li Applied microbiology and biotechnology 83 (4), 597-610, 2009 | 81 | 2009 |
Controlling the oxidoreduction potential of the culture of Clostridium acetobutylicum leads to an earlier initiation of solventogenesis, thus increasing solvent productivity S Wang, Y Zhu, Y Zhang, Y Li Applied Microbiology and Biotechnology, 1-10, 2011 | 80 | 2011 |
Proteomic Analyses To Reveal the Protective Role of Glutathione in Resistance of Lactococcus lactis to Osmotic Stress Y Zhang, Y Zhang, Y Zhu, S Mao, Y Li Applied and environmental microbiology 76 (10), 3177-3186, 2010 | 79 | 2010 |
Introducing a single secondary alcohol dehydrogenase into butanol-tolerant Clostridium acetobutylicum Rh8 switches ABE fermentation to high level IBE fermentation. Z Dai, H Dong, Y Zhu, Y Zhang, Y Li, Y Ma Biotechnology for Biofuels 5, 44, 2012 | 77 | 2012 |
Engineering the robustness of industrial microbes through synthetic biology L Zhu, Y Zhu, Y Zhang, Y Li Trends in microbiology 20 (2), 94-101, 2012 | 71 | 2012 |
Cyclic‐di‐AMP synthesis by the diadenylate cyclase CdaA is modulated by the peptidoglycan biosynthesis enzyme GlmM in Lactococcus lactis Y Zhu, TH Pham, THN Nhiep, NMT Vu, E Marcellin, A Chakrabortti, ... Molecular microbiology 99 (6), 1015-1027, 2016 | 66 | 2016 |
Study of mcr-1 Gene-Mediated Colistin Resistance in Enterobacteriaceae Isolated from Humans and Animals in Different Countries L Hadjadj, T Riziki, Y Zhu, J Li, SM Diene, JM Rolain Genes 8 (12), 394, 2017 | 65 | 2017 |
Enhanced uptake of potassium or glycine betaine or export of cyclic-di-AMP restores osmoresistance in a high cyclic-di-AMP Lactococcus lactis mutant HT Pham, NTH Nhiep, TNM Vu, TAN Huynh, Y Zhu, ALD Huynh, ... PLoS genetics 14 (8), e1007574, 2018 | 62 | 2018 |
Polymyxin Resistance in Acinetobacter baumannii: Genetic Mutations and Transcriptomic Changes in Response to Clinically Relevant Dosage Regimens SE Cheah, MD Johnson, Y Zhu, BT Tsuji, A Forrest, JB Bulitta, JD Boyce, ... Scientific reports 6 (1), 26233, 2016 | 61 | 2016 |
Toward community standards and software for whole-cell modeling D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ... IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016 | 59 | 2016 |
Polymyxin-Induced Lipid A Deacylation in Pseudomonas aeruginosa Perturbs Polymyxin Penetration and Confers High-Level Resistance ML Han, T Velkov, Y Zhu, KD Roberts, AP Le Brun, SH Chow, AD Gutu, ... ACS chemical biology 13 (1), 121-130, 2018 | 53 | 2018 |
Complete genome sequence of Clostridium acetobutylicum DSM 1731, a solvent-producing strain with multireplicon genome architecture G Bao, R Wang, Y Zhu, H Dong, S Mao, Y Zhang, Z Chen, Y Li, Y Ma Journal of bacteriology 193 (18), 5007-5008, 2011 | 51 | 2011 |
Alterations of metabolic and lipid profiles in polymyxin-resistant Pseudomonas aeruginosa ML Han, Y Zhu, DJ Creek, YW Lin, D Anderson, HH Shen, B Tsuji, ... Antimicrobial agents and chemotherapy 62 (6), e02656-17, 2018 | 50 | 2018 |
Comparative metabolomics and transcriptomics reveal multiple pathways associated with polymyxin killing in Pseudomonas aeruginosa ML Han, Y Zhu, DJ Creek, YW Lin, AD Gutu, P Hertzog, T Purcell, ... MSystems 4 (1), e00149-18, 2019 | 49 | 2019 |