Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 MI Love, W Huber, S Anders Genome Biology 15 (12), 1-21, 2014 | 51442 | 2014 |
HTSeq—a Python framework to work with high-throughput sequencing data S Anders, PT Pyl, W Huber Bioinformatics 31 (2), 166-169, 2015 | 16884 | 2015 |
Differential expression analysis for sequence count data S Anders, W Huber Genome Biology 11, R106, 2010 | 15469 | 2010 |
Bioconductor: open software development for computational biology and bioinformatics RC Gentleman, VJ Carey, DM Bates, B Bolstad, M Dettling, S Dudoit, ... Genome Biology 5 (10), 1-16, 2004 | 13620 | 2004 |
Enterotypes of the human gut microbiome M Arumugam, J Raes, E Pelletier, D Le Paslier, T Yamada, DR Mende, ... Nature 473 (7346), 174-180, 2011 | 7313 | 2011 |
Bioinformatics and computational biology solutions using R and Bioconductor R Gentleman, VJ Carey, W Huber, RA Irizarry, S Dudoit Springer, 2005 | 3603 | 2005 |
Orchestrating high-throughput genomic analysis with Bioconductor W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ... Nature Methods 12 (2), 115-121, 2015 | 3087 | 2015 |
Software for computing and annotating genomic ranges M Lawrence, W Huber, H Pagès, P Aboyoun, M Carlson, R Gentleman, ... PLoS computational biology 9 (8), e1003118, 2013 | 3070 | 2013 |
Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt S Durinck, PT Spellman, E Birney, W Huber Nature protocols 4 (8), 1184-1191, 2009 | 2842 | 2009 |
Variance stabilization applied to microarray data calibration and to the quantification of differential expression W Huber, A Von Heydebreck, H Sültmann, A Poustka, M Vingron Bioinformatics 18 (suppl_1), S96-S104, 2002 | 2653 | 2002 |
gplots: Various R programming tools for plotting data GR Warnes, B Bolker, L Bonebakker, R Gentleman, W Huber, A Liaw, ... R package version 2 (4), 1, 2009 | 2588 | 2009 |
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis S Durinck, Y Moreau, A Kasprzyk, S Davis, B De Moor, A Brazma, ... Bioinformatics 21 (16), 3439-3440, 2005 | 1854 | 2005 |
Detecting differential usage of exons from RNA-seq data S Anders, A Reyes, W Huber Genome Research 22, 2008, 2012 | 1514 | 2012 |
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor S Anders, DJ McCarthy, Y Chen, M Okoniewski, GK Smyth, W Huber, ... Nature protocols 8 (9), 1765-1786, 2013 | 1211 | 2013 |
Bidirectional promoters generate pervasive transcription in yeast Z Xu, W Wei, J Gagneur, F Perocchi, S Clauder-Münster, J Camblong, ... Nature 457 (7232), 1033-1037, 2009 | 1019 | 2009 |
arrayQualityMetrics—a bioconductor package for quality assessment of microarray data A Kauffmann, R Gentleman, W Huber Bioinformatics 25 (3), 415-416, 2009 | 981 | 2009 |
Two independent modes of chromatin organization revealed by cohesin removal W Schwarzer, N Abdennur, A Goloborodko, A Pekowska, G Fudenberg, ... Nature 551 (7678), 51-56, 2017 | 936 | 2017 |
Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes B Neumann, T Walter, HÃ Jean-Karim Nature 464 (7289), 721-727, 2010 | 893 | 2010 |
A high-resolution map of transcription in the yeast genome L David, W Huber, M Granovskaia, J Toedling, CJ Palm, L Bofkin, T Jones, ... Proceedings of the National Academy of Sciences 103 (14), 5320-5325, 2006 | 830 | 2006 |
Human haematopoietic stem cell lineage commitment is a continuous process L Velten, SF Haas, S Raffel, S Blaszkiewicz, S Islam, BP Hennig, C Hirche, ... Nature cell biology 19 (4), 271-281, 2017 | 795 | 2017 |