| Resistance and resilience of the forest soil microbiome to logging-associated compaction M Hartmann, PA Niklaus, S Zimmermann, S Schmutz, J Kremer, ... The ISME journal 8 (1), 226-244, 2014 | 382 | 2014 |
| Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations FD Giallonardo, A Töpfer, M Rey, S Prabhakaran, Y Duport, C Leemann, ... Nucleic acids research 42 (14), e115-e115, 2014 | 150 | 2014 |
| Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples DW Lewandowska, O Zagordi, FD Geissberger, V Kufner, S Schmutz, ... Microbiome 5, 1-13, 2017 | 65 | 2017 |
| SARS-CoV-2 variants reveal features critical for replication in primary human cells MO Pohl, I Busnadiego, V Kufner, I Glas, U Karakus, S Schmutz, M Zaheri, ... PLoS biology 19 (3), e3001006, 2021 | 59 | 2021 |
| Molecular characterization of phototrophic microorganisms in the forefield of a receding glacier in the Swiss Alps B Frey, L Bühler, S Schmutz, A Zumsteg, G Furrer Environmental Research Letters 8 (1), 015033, 2013 | 59 | 2013 |
| Two years of viral metagenomics in a tertiary diagnostics unit: evaluation of the first 105 cases V Kufner, A Plate, S Schmutz, DL Braun, HF Günthard, R Capaul, ... Genes 10 (9), 661, 2019 | 49 | 2019 |
| Multifactorial seroprofiling dissects the contribution of pre-existing human coronaviruses responses to SARS-CoV-2 immunity IA Abela, C Pasin, M Schwarzmüller, S Epp, ME Sickmann, MM Schanz, ... Nature Communications 12 (1), 6703, 2021 | 47 | 2021 |
| Viral metagenomics in the clinical realm: lessons learned from a Swiss-wide ring trial T Junier, M Huber, S Schmutz, V Kufner, O Zagordi, S Neuenschwander, ... Genes 10 (9), 655, 2019 | 44 | 2019 |
| Profiling host ANP32A splicing landscapes to predict influenza A virus polymerase adaptation P Domingues, D Eletto, C Magnus, HL Turkington, S Schmutz, O Zagordi, ... Nature communications 10 (1), 3396, 2019 | 39 | 2019 |
| Identification of biomass utilizing bacteria in a carbon‐depleted glacier forefield soil by the use of 13C DNA stable isotope probing A Zumsteg, S Schmutz, B Frey Environmental microbiology reports 5 (3), 424-437, 2013 | 36 | 2013 |
| Antibodies from convalescent plasma promote SARS-CoV-2 clearance in individuals with and without endogenous antibody response M Marconato, IA Abela, A Hauser, M Schwarzmüller, R Katzensteiner, ... The Journal of Clinical Investigation 132 (12), 2022 | 32 | 2022 |
| A comprehensive analysis of primer IDs to study heterogeneous HIV-1 populations D Seifert, F Di Giallonardo, A Töpfer, J Singer, S Schmutz, HF Günthard, ... Journal of molecular biology 428 (1), 238-250, 2016 | 32 | 2016 |
| Meningitis and epididymitis caused by Toscana virus infection imported to Switzerland diagnosed by metagenomic sequencing: a case report F Tschumi, S Schmutz, V Kufner, M Heider, F Pigny, B Schreiner, ... BMC infectious diseases 19, 1-4, 2019 | 30 | 2019 |
| Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data SA Nadeau, TG Vaughan, C Beckmann, I Topolsky, C Chen, E Hodcroft, ... Science Translational Medicine 15 (680), eabn7979, 2022 | 26 | 2022 |
| Absenteeism and presenteeism in healthcare workers due to respiratory illness SP Kuster, J Böni, RD Kouyos, M Huber, S Schmutz, C Shah, ... Infection Control & Hospital Epidemiology 42 (3), 268-273, 2021 | 24 | 2021 |
| Metagenomic virome sequencing in living donor and recipient kidney transplant pairs revealed JC polyomavirus transmission PW Schreiber, V Kufner, K Hübel, S Schmutz, O Zagordi, A Kaur, ... Clinical Infectious Diseases 69 (6), 987-994, 2019 | 22 | 2019 |
| Low prevalence of transmitted HIV-1 drug resistance detected by a dried blood spot (DBS)-based next-generation sequencing (NGS) method in newly diagnosed individuals in … HA Mbunkah, A Marzel, S Schmutz, YL Kok, O Zagordi, M Shilaih, ... Journal of Antimicrobial Chemotherapy 73 (7), 1917-1929, 2018 | 18 | 2018 |
| External quality assessment of SARS-CoV-2 sequencing: an ESGMD-SSM pilot trial across 15 European laboratories F Wegner, T Roloff, M Huber, S Cordey, A Ramette, Y Gerth, C Bertelli, ... Journal of clinical microbiology 60 (1), e01698-21, 2022 | 16 | 2022 |
| Quantifying SARS-CoV-2 spread in Switzerland based on genomic sequencing data S Nadeau, C Beckmann, I Topolsky, T Vaughan, E Hodcroft, T Schär, ... medRxiv, 2020.10. 14.20212621, 2020 | 13 | 2020 |
| Nosocomial COVID-19 incidence and secondary attack rates among patients of tertiary care center, Zurich, Switzerland A Wolfensberger, V Kufner, M Zaheri, M Zeeb, I Nortes, PW Schreiber, ... Emerging Infectious Diseases 28 (10), 2087, 2022 | 10 | 2022 |
