| Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ... Nature 603 (7902), 679-686, 2022 | 1518 | 2022 |
| Early assessment of the clinical severity of the SARS-CoV-2 omicron variant in South Africa: a data linkage study N Wolter, W Jassat, S Walaza, R Welch, H Moultrie, M Groome, ... The Lancet 399 (10323), 437-446, 2022 | 1081 | 2022 |
| Omicron extensively but incompletely escapes Pfizer BNT162b2 neutralization S Cele, L Jackson, DS Khoury, K Khan, T Moyo-Gwete, H Tegally, JE San, ... Nature 602 (7898), 654-656, 2022 | 1064 | 2022 |
| Emergence of SARS-CoV-2 omicron lineages BA. 4 and BA. 5 in South Africa H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ... Nature medicine 28 (9), 1785-1790, 2022 | 570 | 2022 |
| SARS-CoV-2 Omicron has extensive but incomplete escape of Pfizer BNT162b2 elicited neutralization and requires ACE2 for infection S Cele, L Jackson, DS Khoury, K Khan, T Moyo-Gwete, H Tegally, JE San, ... MedRxiv, 2021 | 365 | 2021 |
| A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa E Wilkinson, M Giovanetti, H Tegally, JE San, R Lessells, D Cuadros, ... Science 374 (6566), 423-431, 2021 | 199 | 2021 |
| Continued emergence and evolution of Omicron in South Africa: New BA. 4 and BA. 5 lineages H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ... MedRxiv, 2022.05. 01.22274406, 2022 | 110 | 2022 |
| Multi-donor longitudinal antibody repertoire sequencing reveals the existence of public antibody clonotypes in HIV-1 infection I Setliff, WJ McDonnell, N Raju, RG Bombardi, AA Murji, C Scheepers, ... Cell host & microbe 23 (6), 845-854. e6, 2018 | 106 | 2018 |
| The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance H Tegally, JE San, M Cotten, M Moir, B Tegomoh, G Mboowa, DP Martin, ... Science 378 (6615), eabq5358, 2022 | 101 | 2022 |
| Ability to develop broadly neutralizing HIV-1 antibodies is not restricted by the germline Ig gene repertoire C Scheepers, RK Shrestha, BE Lambson, KJL Jackson, IA Wright, ... The Journal of Immunology 194 (9), 4371-4378, 2015 | 90 | 2015 |
| Kosakovsky Pond SL R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ... Kraemer MUG, Kuate-Lere L, Laguda-Akingba O, Lesetedi-Mafoko O, Lessells RJ …, 2022 | 83 | 2022 |
| Clinical severity of SARS-CoV-2 Omicron BA. 4 and BA. 5 lineages compared to BA. 1 and Delta in South Africa N Wolter, W Jassat, S Walaza, R Welch, H Moultrie, MJ Groome, ... Nature communications 13 (1), 5860, 2022 | 80 | 2022 |
| IgG3 enhances neutralization potency and Fc effector function of an HIV V2-specific broadly neutralizing antibody SI Richardson, BE Lambson, AR Crowley, A Bashirova, C Scheepers, ... PLoS pathogens 15 (12), e1008064, 2019 | 79 | 2019 |
| Selection analysis identifies clusters of unusual mutational changes in Omicron lineage BA. 1 that likely impact Spike function DP Martin, S Lytras, AG Lucaci, W Maier, B Grüning, SD Shank, S Weaver, ... Molecular biology and evolution 39 (4), msac061, 2022 | 75 | 2022 |
| Novel CYP2C9 and VKORC1 gene variants associated with warfarin dosage variability in the South African black population C Mitchell, N Gregersen, A Krause Pharmacogenomics 12 (7), 953-963, 2011 | 72 | 2011 |
| Inferred allelic variants of immunoglobulin receptor genes: a system for their evaluation, documentation, and naming M Ohlin, C Scheepers, M Corcoran, WD Lees, CE Busse, D Bagnara, ... Frontiers in immunology 10, 435, 2019 | 60 | 2019 |
| Rapid replacement of the Beta variant by the Delta variant in South Africa H Tegally, E Wilkinson, CL Althaus, M Giovanetti, JE San, J Giandhari, ... MedRxiv, 2021.09. 23.21264018, 2021 | 56 | 2021 |
| Diversity in immunogenomics: the value and the challenge K Peng, Y Safonova, M Shugay, AB Popejoy, OL Rodriguez, F Breden, ... Nature methods 18 (6), 588-591, 2021 | 52 | 2021 |
| OGRDB: a reference database of inferred immune receptor genes W Lees, CE Busse, M Corcoran, M Ohlin, C Scheepers, FA Matsen IV, ... Nucleic acids research 48 (D1), D964-D970, 2020 | 43 | 2020 |
| The continuous evolution of SARS-CoV-2 in South Africa: a new lineage with rapid accumulation of mutations of concern and global detection C Scheepers, J Everatt, DG Amoako, A Mnguni, A Ismail, B Mahlangu, ... Medrxiv, 2021 | 42* | 2021 |
