Influenza vaccination and COVID-19 mortality in the USA: an ecological study C Zanettini, M Omar, W Dinalankara, EL Imada, E Colantuoni, ... Vaccines 9 (5), 427, 2021 | 143* | 2021 |
Building tools for machine learning and artificial intelligence in cancer research: best practices and a case study with the PathML toolkit for computational pathology J Rosenthal, R Carelli, M Omar, D Brundage, E Halbert, J Nyman, SN Hari, ... Molecular Cancer Research 20 (2), 202-206, 2022 | 32 | 2022 |
Hyaluronan driven by epithelial aPKC deficiency remodels the microenvironment and creates a vulnerability in mesenchymal colorectal cancer A Martinez-Ordoñez, A Duran, M Ruiz-Martinez, T Cid-Diaz, X Zhang, ... Cancer Cell 41 (2), 252-271. e9, 2023 | 22 | 2023 |
Comprehensive integration of genome-wide association and gene expression studies reveals novel gene signatures and potential therapeutic targets for Helicobacter pylori-induced … MT Badr, M Omar, G Häcker Frontiers in Immunology 12, 624117, 2021 | 11 | 2021 |
Using biological constraints to improve prediction in precision oncology M Omar, W Dinalankara, L Mulder, T Coady, C Zanettini, EL Imada, ... Iscience 26 (3), 2023 | 6* | 2023 |
Host blood gene signatures can detect the progression to severe and cerebral malaria M Omar, L Marchionni, G Häcker, MT Badr Frontiers in cellular and infection microbiology 11, 743616, 2021 | 5 | 2021 |
Artificial intelligence applications in histopathology CD Bahadir, M Omar, J Rosenthal, L Marchionni, B Liechty, DJ Pisapia, ... Nature Reviews Electrical Engineering 1 (2), 93-108, 2024 | 4 | 2024 |
Distinct mesenchymal cell states mediate prostate cancer progression H Pakula, M Omar, R Carelli, F Pederzoli, GN Fanelli, T Pannellini, ... Nature Communications 15 (1), 363, 2024 | 4 | 2024 |
Donor‐derived acute myeloid leukemia in solid organ transplantation L Marchionni, FP Lobo, R Kostadinov, A Serra, FG Besso, S Deaglio, ... American Journal of Transplantation 22 (12), 3111-3119, 2022 | 4 | 2022 |
A robust and interpretable gene signature for predicting the lymph node status of primary T1/T2 oral cavity squamous cell carcinoma Y Ghantous, M Omar, EC Broner, N Agrawal, AT Pearson, AJ Rosenberg, ... International journal of cancer 150 (3), 450-460, 2022 | 4 | 2022 |
ZNF92, an unexplored transcription factor with remarkably distinct breast cancer over-expression associated with prognosis and cell-of-origin M Kamran, U Bhattacharya, M Omar, L Marchionni, TA Ince NPJ Breast Cancer 8 (1), 99, 2022 | 3 | 2022 |
Applications of Digital Pathology in Cancer: A Comprehensive Review M Omar, MK Alexanderani, I Valencia, M Loda, L Marchionni Annual Review of Cancer Biology 8, 2024 | 1 | 2024 |
Notch-based gene signature for predicting the response to neoadjuvant chemotherapy in triple-negative breast cancer M Omar, PV Nuzzo, F Ravera, S Bleve, GN Fanelli, C Zanettini, I Valencia, ... Journal of Translational Medicine 21 (1), 811, 2023 | 1 | 2023 |
Multi-omics biomarkers aid prostate cancer prognostication Z Xu, M Omar, E Benedetti, J Rosenthal, R Umeton, J Krumsiek, ... bioRxiv, 2022.09. 20.508244, 2022 | 1 | 2022 |
Large-scale differential gene expression analysis identifies genes associated with Bipolar Disorder in post-mortem brain MN Omar, M Youssef, M Abdellatif bioRxiv, 770529, 2019 | 1 | 2019 |
ChatGPT for digital pathology research M Omar, V Ullanat, M Loda, L Marchionni, R Umeton The Lancet Digital Health, 2024 | | 2024 |
Semi-Supervised, Attention-Based Deep Learning for Predicting TMPRSS2: ERG Fusion Status in Prostate Cancer Using Whole Slide Images M Omar, Z Xu, SB Rand, MK Alexanderani, DC Salles, I Valencia, ... Molecular Cancer Research 22 (4), 347-359, 2024 | | 2024 |
Characterizing a discernible stromal fibroblastic gene signature in the shift from high-grade prostatic intraepithelial neoplasia to aggressive prostate cancer MK Alexanderani, L Queiroz, M Omar, C Zanettini, H Pakula, L Marchionni, ... Cancer Research 84 (6_Supplement), 6849-6849, 2024 | | 2024 |
Decoding colon cancer recurrence: Unveiling accurate predictions with attention-guided deep neural networks on histopathological whole slide images MK Alexanderani, M Omar, M Greenblatt, E Cesarman, MT Diaz-Meco, ... Cancer Research 84 (6_Supplement), 2584-2584, 2024 | | 2024 |
Robust inference of PTEN deletion in prostate cancer from routine histopathology whole slide images using attention-based deep learning F Scarfò, M Omar, L Marchionni Cancer Research 84 (6_Supplement), 3521-3521, 2024 | | 2024 |