Mass spectrometry profiling of HLA-associated peptidomes in mono-allelic cells enables more accurate epitope prediction JG Abelin, DB Keskin, S Sarkizova, CR Hartigan, W Zhang, J Sidney, ... Immunity 46 (2), 315-326, 2017 | 595 | 2017 |
Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research V Lin,HH, Zhang,GL, Tongchusak,S, Reinherz,EL, Brusic BMC Bioinformatics 9 (Suppl 12), S22, 2008 | 450* | 2008 |
A large peptidome dataset improves HLA class I epitope prediction across most of the human population S Sarkizova, S Klaeger, PM Le, LW Li, G Oliveira, H Keshishian, ... Nature biotechnology 38 (2), 199-209, 2020 | 396 | 2020 |
Reverse transcriptase template switching and false alternative transcripts J Cocquet, A Chong, G Zhang, RA Veitia Genomics 88 (1), 127-131, 2006 | 293 | 2006 |
Evolutionarily conserved protein sequences of influenza a viruses, avian and human, as vaccine targets AT Heiny, O Miotto, KN Srinivasan, AM Khan, GL Zhang, V Brusic, TW Tan, ... PloS one 2 (11), e1190, 2007 | 231 | 2007 |
MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides GL Zhang, AM Khan, KN Srinivasan, JT August, V Brusic Nucleic acids research 33 (suppl_2), W172-W179, 2005 | 186 | 2005 |
Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters VB Bajic, SH Seah, A Chong, G Zhang, JLY Koh, V Brusic Bioinformatics 18 (1), 198-199, 2002 | 142 | 2002 |
Prediction of promiscuous peptides that bind HLA class I molecules V Brusic, N Petrovsky, G Zhang, VB Bajic Immunology and Cell Biology 80 (3), 280-285, 2002 | 129 | 2002 |
A conserved E7-derived cytotoxic T lymphocyte epitope expressed on human papillomavirus 16-transformed HLA-A2+ epithelial cancers AB Riemer, DB Keskin, G Zhang, M Handley, KS Anderson, V Brusic, ... Journal of Biological Chemistry 285 (38), 29608-29622, 2010 | 128 | 2010 |
Conservation and variability of dengue virus proteins: implications for vaccine design AM Khan, O Miotto, EJM Nascimento, KN Srinivasan, AT Heiny, GL Zhang, ... PLoS neglected tropical diseases 2 (8), e272, 2008 | 119 | 2008 |
PREDTAP: a system for prediction of peptide binding to the human transporter associated with antigen processing GL Zhang, N Petrovsky, CK Kwoh, JT August, V Brusic Immunome research 2, 1-12, 2006 | 87 | 2006 |
Mutated BCR-ABL Generates Immunogenic T-cell Epitopes in CML Patients A Cai, DB Keskin, DS DeLuca, A Alonso, W Zhang, GL Zhang, ... Clinical Cancer Research 18 (20), 5761-5772, 2012 | 74 | 2012 |
PRED BALB/c : a system for the prediction of peptide binding to H2 d molecules, a haplotype of the BALB/c mouse GL Zhang, KN Srinivasan, A Veeramani, JT August, V Brusic Nucleic acids research 33 (suppl_2), W180-W183, 2005 | 69 | 2005 |
TANTIGEN: a comprehensive database of tumor T cell antigens LR Olsen, S Tongchusak, H Lin, EL Reinherz, V Brusic, GL Zhang Cancer Immunology, Immunotherapy 66, 731-735, 2017 | 67 | 2017 |
Machine learning competition in immunology–Prediction of HLA class I binding peptides GL Zhang, HR Ansari, P Bradley, GC Cawley, T Hertz, X Hu, N Jojic, ... Journal of immunological methods 374 (1-2), 1-4, 2011 | 66 | 2011 |
MULTIPRED2: a computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles GL Zhang, DS DeLuca, DB Keskin, L Chitkushev, T Zlateva, O Lund, ... Journal of immunological methods 374 (1-2), 53-61, 2011 | 65 | 2011 |
Physical detection of influenza A epitopes identifies a stealth subset on human lung epithelium evading natural CD8 immunity DB Keskin, BB Reinhold, GL Zhang, AR Ivanov, BL Karger, EL Reinherz Proceedings of the National Academy of Sciences 112 (7), 2151-2156, 2015 | 59 | 2015 |
CovidCTNet: an open-source deep learning approach to diagnose covid-19 using small cohort of CT images T Javaheri, M Homayounfar, Z Amoozgar, R Reiazi, F Homayounieh, ... NPJ digital medicine 4 (1), 29, 2021 | 58 | 2021 |
Covidctnet: An open-source deep learning approach to identify covid-19 using ct image T Javaheri, M Homayounfar, Z Amoozgar, R Reiazi, F Homayounieh, ... arXiv preprint arXiv:2005.03059, 2020 | 57 | 2020 |
BCL2-specific inhibitor ABT-199 synergizes strongly with cytarabine against the early immature LOUCY cell line but not more-differentiated T-ALL cell lines NM Anderson, I Harrold, MR Mansour, T Sanda, M McKeown, N Nagykary, ... Leukemia 28 (5), 1145-1148, 2014 | 54 | 2014 |