| PYR/PYL/RCAR family members are major in‐vivo ABI1 protein phosphatase 2C‐interacting proteins in Arabidopsis N Nishimura, A Sarkeshik, K Nito, SY Park, A Wang, PC Carvalho, S Lee, ... The Plant Journal 61 (2), 290-299, 2010 | 545 | 2010 |
| Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0 PC Carvalho, DB Lima, FV Leprevost, MDM Santos, JSG Fischer, ... Nature Protocols 11 (1), 102-117, 2016 | 257 | 2016 |
| PatternLab for proteomics: a tool for differential shotgun proteomics PC Carvalho, JSG Fischer, EI Chen, JR Yates, VC Barbosa BMC bioinformatics 9 (1), 1-14, 2008 | 150 | 2008 |
| Search engine processor: filtering and organizing peptide spectrum matches PC Carvalho, JSG Fischer, T Xu, D Cociorva, TS Balbuena, RH Valente, ... Proteomics 12 (7), 944-949, 2012 | 132 | 2012 |
| XDIA: improving on the label-free data-independent analysis PC Carvalho, X Han, T Xu, D Cociorva, M da Gloria Carvalho, ... Bioinformatics 26 (6), 847-848, 2010 | 123 | 2010 |
| Identifying differences in protein expression levels by spectral counting and feature selection PC Carvalho, J Hewel, VC Barbosa, JR Yates III Genetics and molecular research: GMR 7 (2), 342, 2008 | 112 | 2008 |
| Improvements in proteomic metrics of low abundance proteins through proteome equalization using ProteoMiner prior to MudPIT BR Fonslow, PC Carvalho, K Academia, S Freeby, T Xu, A Nakorchevsky, ... Journal of proteome research 10 (8), 3690-3700, 2011 | 108 | 2011 |
| SIM-XL: A powerful and user-friendly tool for peptide cross-linking analysis DB Lima, TB de Lima, TS Balbuena, AGC Neves-Ferreira, VC Barbosa, ... Journal of proteomics 129, 51-55, 2015 | 103 | 2015 |
| Platelet proteome reveals novel pathways of platelet activation and platelet-mediated immunoregulation in dengue MRO Trugilho, ED Hottz, GVF Brunoro, A Teixeira-Ferreira, PC Carvalho, ... PLoS pathogens 13 (5), e1006385, 2017 | 99 | 2017 |
| YADA: a tool for taking the most out of high-resolution spectra PC Carvalho, T Xu, X Han, D Cociorva, VC Barbosa, JR Yates III Bioinformatics 25 (20), 2734-2736, 2009 | 93 | 2009 |
| Improving the TFold test for differential shotgun proteomics PC Carvalho, JR Yates III, VC Barbosa Bioinformatics 28 (12), 1652-1654, 2012 | 82 | 2012 |
| PatternLab: from mass spectra to label‐free differential shotgun proteomics PC Carvalho, JSG Fischer, T Xu, JR Yates III, VC Barbosa Current protocols in bioinformatics 40 (1), 13.19. 1-13.19. 18, 2012 | 80 | 2012 |
| Identifying components of protein complexes in C. elegans using co-immunoprecipitation and mass spectrometry JJ Moresco, PC Carvalho, JR Yates III Journal of proteomics 73 (11), 2198-2204, 2010 | 75 | 2010 |
| On best practices in the development of bioinformatics software FV Leprevost, VC Barbosa, EL Francisco, Y Perez-Riverol, PC Carvalho Frontiers in genetics 5, 199, 2014 | 73 | 2014 |
| On best practices in the development of bioinformatics software FV Leprevost, VC Barbosa, EL Francisco, Y Perez-Riverol, PC Carvalho Frontiers in genetics 5, 199, 2014 | 73 | 2014 |
| An in-depth snake venom proteopeptidome characterization: Benchmarking Bothrops jararaca CA Nicolau, PC Carvalho, ILM Junqueira-de-Azevedo, A Teixeira-Ferreira, ... Journal of Proteomics 151, 214-231, 2017 | 64 | 2017 |
| Single-step inline hydroxyapatite enrichment facilitates identification and quantitation of phosphopeptides from mass-limited proteomes with MudPIT BR Fonslow, SM Niessen, M Singh, CCL Wong, T Xu, PC Carvalho, ... Journal of proteome research 11 (5), 2697-2709, 2012 | 62 | 2012 |
| Reevaluating the Trypanosoma cruzi proteomic map: The shotgun description of bloodstream trypomastigotes GVF Brunoro, MA Caminha, AT da Silva Ferreira, F da Veiga Leprevost, ... Journal of Proteomics 115, 58-65, 2015 | 56 | 2015 |
| Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins DB Lima, JT Melchior, J Morris, VC Barbosa, J Chamot-Rooke, ... Nature protocols 13 (3), 431-458, 2018 | 55 | 2018 |
| PepExplorer: a similarity-driven tool for analyzing de novo sequencing results FV Leprevost, RH Valente, DB Lima, J Perales, R Melani, JR Yates, ... Molecular & Cellular Proteomics 13 (9), 2480-2489, 2014 | 46 | 2014 |
Juliana FischerInstituto Carlos Chagas在 tecpar.br 的电子邮件经过验证
