| Dynamic reorganization of chromatin accessibility signatures during dedifferentiation of secretory precursors into Lgr5+ intestinal stem cells U Jadhav, M Saxena, NK O’Neill, A Saadatpour, GC Yuan, Z Herbert, ... Cell stem cell 21 (1), 65-77. e5, 2017 | 265 | 2017 |
| Acquired tissue-specific promoter bivalency is a basis for PRC2 necessity in adult cells U Jadhav, K Nalapareddy, M Saxena, NK O’Neill, L Pinello, GC Yuan, ... Cell 165 (6), 1389-1400, 2016 | 145 | 2016 |
| Chromatin immunoprecipitation from fixed clinical tissues reveals tumor-specific enhancer profiles P Cejas, L Li, NK O'Neill, M Duarte, P Rao, M Bowden, CW Zhou, ... Nature medicine 22 (6), 685-691, 2016 | 126 | 2016 |
| RORα-expressing T regulatory cells restrain allergic skin inflammation N Malhotra, JM Leyva-Castillo, U Jadhav, O Barreiro, C Kam, NK O’Neill, ... Science immunology 3 (21), eaao6923, 2018 | 115 | 2018 |
| Extensive recovery of embryonic enhancer and gene memory stored in hypomethylated enhancer DNA U Jadhav, A Cavazza, KK Banerjee, H Xie, NK O’Neill, V Saenz-Vash, ... Molecular cell 74 (3), 542-554. e5, 2019 | 80 | 2019 |
| Transcription factor-dependent ‘anti-repressive’mammalian enhancers exclude H3K27me3 from extended genomic domains M Saxena, AK San Roman, NK O'Neill, R Sulahian, U Jadhav, ... Genes & development 31 (23-24), 2391-2404, 2017 | 43 | 2017 |
| Enhancer, transcriptional, and cell fate plasticity precedes intestinal determination during endoderm development KK Banerjee, M Saxena, N Kumar, L Chen, A Cavazza, NH Toke, ... Genes & development 32 (21-22), 1430-1442, 2018 | 36 | 2018 |
| Single cell transcriptomic profiling of a neuron-astrocyte assembloid tauopathy model HD Rickner, L Jiang, R Hong, NK O’Neill, CA Mojica, BJ Snyder, L Zhang, ... Nature communications 13 (1), 6275, 2022 | 23 | 2022 |
| Bulk brain tissue cell-type deconvolution with bias correction for single-nuclei RNA sequencing data using DeTREM NK O’Neill, TD Stein, J Hu, H Rehman, JD Campbell, M Yajima, X Zhang, ... BMC bioinformatics 24 (1), 349, 2023 | 4 | 2023 |
| Molecular quantitative trait locus mapping in human complex diseases OA Olayinka, NK O'Neill, LA Farrer, G Wang, X Zhang Current protocols 2 (5), e426, 2022 | 4 | 2022 |
| Cognitive resilience to Alzheimer's disease characterized by cell‐type abundance N O'Neill, TD Stein, OA Olayinka, JA Empawi, J Hu, T Tong, X Zhang, ... Alzheimer's & Dementia, 2024 | | 2024 |
| Single Nucleus RNA Sequencing Reveals Interaction Between Microglia and Endothelial Cells in Mixed Alzheimer’s Disease and Vascular Pathology OA Olayinka, NK O'Neill, JA Empawi, P Bock, J Hu, M Wong, TD Stein, ... Alzheimer's Association International Conference, 2024 | | 2024 |
| Identification of differentially expressed genes in post-mortem tissue from African American Alzheimer disease cases and controls MW Logue, AT Labadorf, NK O'Neill, DW Dickson, ME Flanagan, ... Alzheimer's Association International Conference, 2024 | | 2024 |
| Retinoic Acid Receptor-Related Orphan Receptor α expressing T regulatory cells restrain allergic skin inflammation N Malhotra, JM Leyva-Castillo, U Jadhav, O Barreiro, C Kam, NK O’Neill, ... | | |
