High performance cellular level agent-based simulation with FLAME for the GPU P Richmond, D Walker, S Coakley, D Romano Briefings in bioinformatics 11 (3), 334-347, 2010 | 247 | 2010 |
Exploitation of high performance computing in the FLAME agent-based simulation framework S Coakley, M Gheorghe, M Holcombe, S Chin, D Worth, C Greenough 2012 IEEE 14th International Conference on High Performance Computing and …, 2012 | 135 | 2012 |
A high performance agent based modelling framework on graphics card hardware with CUDA P Richmond, S Coakley, DM Romano Proceedings of The 8th International Conference on Autonomous Agents and …, 2009 | 110 | 2009 |
Modelling complex biological systems using an agent-based approach M Holcombe, S Adra, M Bicak, S Chin, S Coakley, AI Graham, J Green, ... Integrative Biology 4 (1), 53-64, 2012 | 90 | 2012 |
An integrated systems biology approach to understanding the rules of keratinocyte colony formation T Sun, P McMinn, S Coakley, M Holcombe, R Smallwood, S MacNeil Journal of the Royal Society Interface 4 (17), 1077-1092, 2007 | 78 | 2007 |
A general framework for agent-based modelling of complex systems M Holcombe, S Coakley, R Smallwood Proceedings of the 2006 European conference on complex systems 1, 2006 | 65 | 2006 |
Large-scale modeling of economic systems M Holcombe, S Coakley, M Kiran, S Chin, C Greenough, D Worth, ... Complex Systems Publications, 2013 | 48 | 2013 |
Using x-machines as a formal basis for describing agents in agent-based modelling S Coakley, R Smallwood, M Holcombe Simulation Series 38 (2), 33, 2006 | 47 | 2006 |
From molecules to insect communities-How formal agent based computational modelling is uncovering new biological facts S Coakley, R Smallwood, M Holcombe Scientiae Mathematicae Japonicae 64 (2), 185-198, 2006 | 44 | 2006 |
Cellular level agent based modelling on the graphics processing unit P Richmond, S Coakley, D Romano 2009 international workshop on high performance computational systems …, 2009 | 37 | 2009 |
Formal software architecture for agent-based modelling in biology ST Coakley University of Sheffield, 2007 | 27 | 2007 |
Validation and discovery from computational biology models M Kiran, S Coakley, N Walkinshaw, P McMinn, M Holcombe Biosystems 93 (1-2), 141-150, 2008 | 26 | 2008 |
Agent-Based Modeling of Oxygen-Responsive Transcription Factors in Escherichia coli H Bai, MD Rolfe, W Jia, S Coakley, RK Poole, J Green, M Holcombe Plos computational biology 10 (4), e1003595, 2014 | 19 | 2014 |
Large-scale simulations with FLAME S Coakley, P Richmond, M Gheorghe, S Chin, D Worth, M Holcombe, ... Intelligent Agents in Data-intensive Computing, 123-142, 2016 | 17 | 2016 |
Flame-ii: a redesign of the flexible large-scale agent-based modelling environment LS Chin, D Worth, C Greenough, S Coakley, M Holcombe, M Gheorghe Rutherford Appleton Lab Tech Rep, 2012 | 13 | 2012 |
Flame: An approach to the parallelisation of agent-based applications AL Chin, AD Worth, AC Greenough, S Coakley, M Holcombe, M Kiran Work 501, 63259, 2012 | 13 | 2012 |
An Agent-Based software platform for modelling systems biology SF Adra, S Coakley, M Kiran, P McMinn University of Sheffield Epitheliome Project: Technical Report: University of …, 2008 | 9 | 2008 |
Individual cell-based simulation of 3D multicellular spheroid self-assembly J Zhu, S Coakley, M Holcombe, S MacNeil, RH Smallwood | 5 | 2006 |
Modelling and Analysis of E. coli Respiratory Chain A Ţurcanu, L Mierlă, F Ipate, A Stefanescu, H Bai, M Holcombe, S Coakley Applications of Membrane Computing in Systems and Synthetic Biology, 247-266, 2014 | 4 | 2014 |
The exploitation of parallel high performance systems in the FLAME agent-based simulation framework C Greenough, D Worth, S Chin, M Holcombe, S Coakley RAL Technical Reports RAL-TR-2008-022, 2008 | 4 | 2008 |