Metabolic engineering of Saccharomyces cerevisiae ethanol strains PE-2 and CAT-1 for efficient lignocellulosic fermentation A Romaní, F Pereira, B Johansson, L Domingues Bioresource technology 179, 150-158, 2015 | 93 | 2015 |
Laboratory evolution reveals regulatory and metabolic trade-offs of glycerol utilization in Saccharomyces cerevisiae T Strucko, K Zirngibl, F Pereira, E Kafkia, ET Mohamed, M Rettel, F Stein, ... Metabolic engineering 47, 73-82, 2018 | 59 | 2018 |
Yeast metabolic chassis designs for diverse biotechnological products P Jouhten, T Boruta, S Andrejev, F Pereira, I Rocha, KR Patil Scientific reports 6 (1), 29694, 2016 | 44 | 2016 |
Operation of a TCA cycle subnetwork in the mammalian nucleus E Kafkia, A Andres-Pons, K Ganter, M Seiler, TS Smith, A Andrejeva, ... Science advances 8 (35), eabq5206, 2022 | 39 | 2022 |
Co-translational assembly orchestrates competing biogenesis pathways M Seidel, A Becker, F Pereira, JJM Landry, NTD de Azevedo, CM Fusco, ... Nature communications 13 (1), 1224, 2022 | 29 | 2022 |
Adaptive laboratory evolution of microbial co‐cultures for improved metabolite secretion D Konstantinidis, F Pereira, EM Geissen, K Grkovska, E Kafkia, P Jouhten, ... Molecular systems biology 17 (8), e10189, 2021 | 29 | 2021 |
Improved gap repair cloning in yeast: treatment of the gapped vector with Taq DNA polymerase avoids vector self‐ligation D Bessa, F Pereira, R Moreira, B Johansson, O Queirós Yeast 29 (10), 419-423, 2012 | 28 | 2012 |
CRISPRi screens reveal genes modulating yeast growth in lignocellulose hydrolysate F Gutmann, C Jann, F Pereira, A Johansson, LM Steinmetz, KR Patil Biotechnology for Biofuels 14, 1-14, 2021 | 23 | 2021 |
Pydna: a simulation and documentation tool for DNA assembly strategies using python F Pereira, F Azevedo, Â Carvalho, GF Ribeiro, MW Budde, B Johansson BMC bioinformatics 16, 1-10, 2015 | 23 | 2015 |
Yeast pathway kit: a method for metabolic pathway assembly with automatically simulated executable documentation F Pereira, F Azevedo, NS Parachin, B Hahn-Hagerdal, ... ACS Synthetic Biology 5 (5), 386-394, 2016 | 20 | 2016 |
The MX4blaster cassette: repeated and clean Saccharomyces cerevisiae genome modification using the genome-wide deletion collection  Carvalho, F Pereira, B Johansson FEMS Yeast Research 13 (8), 711-719, 2013 | 15 | 2013 |
Predictive evolution of metabolic phenotypes using model‐designed environments P Jouhten, D Konstantinidis, F Pereira, S Andrejev, K Grkovska, S Castillo, ... Molecular Systems Biology 18 (10), e10980, 2022 | 8 | 2022 |
Model‐guided development of an evolutionarily stable yeast chassis F Pereira, H Lopes, P Maia, B Meyer, J Nocon, P Jouhten, ... Molecular systems biology 17 (7), e10253, 2021 | 8 | 2021 |
Plasmids for in vivo construction of integrative Candida albicans vectors in Saccharomyces cerevisiae N Vieira, F Pereira, M Casal, AJP Brown, S Paiva, B Johansson Yeast 27 (11), 933-939, 2010 | 4 | 2010 |
Probing the potential of the Shark Panel InDel multiplex v2. 0 on the forensic identification of batoid elasmobranchs CRL Amaral, A Bitencourt, C Teixeira, F Pereira, DA Silva, A Amorim, ... Forensic Science International: Genetics Supplement Series 6, e221-e223, 2017 | 3 | 2017 |
Co-translational assembly counteracts promiscuous interactions M Seidel, A Becker, F Pereira, JJM Landry, NTD de Azevedo, CM Fusco, ... bioRxiv, 2021.07. 13.452229, 2021 | 2 | 2021 |
Homologous recombination deficiency as prognostic marker in metastatic gastric cancer. N Sousa, C Faustino, LMN Aguas, J Freire, C Coutinho, I Faustino, ... Journal of Clinical Oncology 37 (15_suppl), 4040-4040, 2019 | 2 | 2019 |
Yeast chassis design for production of dicarboxylic acids F Pereira, H Lopes, P Maia, B Meyer, D Konstantinidis, E Kafkia, P Kötter, ... Elsevier 1, 2018 | 2 | 2018 |
Directed Evolution of a Mutualistic Community of Organisms for the Production of a Nutrient or a Nutraceutical D Konstantinidis, KR Patil, F Pereira, CDML Machado, KIM YongKyu US Patent App. 17/265,829, 2021 | 1 | 2021 |
3.53 Synthetic Biology: An Overview  de Carvalho, KG Vanegas, F Pereira, S Theobald, A Takos Comprehensive Biotechnology 3rd Edition, 659-670, 2019 | 1 | 2019 |