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Filipa Pereira
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Metabolic engineering of Saccharomyces cerevisiae ethanol strains PE-2 and CAT-1 for efficient lignocellulosic fermentation
A Romaní, F Pereira, B Johansson, L Domingues
Bioresource technology 179, 150-158, 2015
932015
Laboratory evolution reveals regulatory and metabolic trade-offs of glycerol utilization in Saccharomyces cerevisiae
T Strucko, K Zirngibl, F Pereira, E Kafkia, ET Mohamed, M Rettel, F Stein, ...
Metabolic engineering 47, 73-82, 2018
592018
Yeast metabolic chassis designs for diverse biotechnological products
P Jouhten, T Boruta, S Andrejev, F Pereira, I Rocha, KR Patil
Scientific reports 6 (1), 29694, 2016
442016
Operation of a TCA cycle subnetwork in the mammalian nucleus
E Kafkia, A Andres-Pons, K Ganter, M Seiler, TS Smith, A Andrejeva, ...
Science advances 8 (35), eabq5206, 2022
392022
Co-translational assembly orchestrates competing biogenesis pathways
M Seidel, A Becker, F Pereira, JJM Landry, NTD de Azevedo, CM Fusco, ...
Nature communications 13 (1), 1224, 2022
292022
Adaptive laboratory evolution of microbial co‐cultures for improved metabolite secretion
D Konstantinidis, F Pereira, EM Geissen, K Grkovska, E Kafkia, P Jouhten, ...
Molecular systems biology 17 (8), e10189, 2021
292021
Improved gap repair cloning in yeast: treatment of the gapped vector with Taq DNA polymerase avoids vector self‐ligation
D Bessa, F Pereira, R Moreira, B Johansson, O Queirós
Yeast 29 (10), 419-423, 2012
282012
CRISPRi screens reveal genes modulating yeast growth in lignocellulose hydrolysate
F Gutmann, C Jann, F Pereira, A Johansson, LM Steinmetz, KR Patil
Biotechnology for Biofuels 14, 1-14, 2021
232021
Pydna: a simulation and documentation tool for DNA assembly strategies using python
F Pereira, F Azevedo, Â Carvalho, GF Ribeiro, MW Budde, B Johansson
BMC bioinformatics 16, 1-10, 2015
232015
Yeast pathway kit: a method for metabolic pathway assembly with automatically simulated executable documentation
F Pereira, F Azevedo, NS Parachin, B Hahn-Hagerdal, ...
ACS Synthetic Biology 5 (5), 386-394, 2016
202016
The MX4blaster cassette: repeated and clean Saccharomyces cerevisiae genome modification using the genome-wide deletion collection
 Carvalho, F Pereira, B Johansson
FEMS Yeast Research 13 (8), 711-719, 2013
152013
Predictive evolution of metabolic phenotypes using model‐designed environments
P Jouhten, D Konstantinidis, F Pereira, S Andrejev, K Grkovska, S Castillo, ...
Molecular Systems Biology 18 (10), e10980, 2022
82022
Model‐guided development of an evolutionarily stable yeast chassis
F Pereira, H Lopes, P Maia, B Meyer, J Nocon, P Jouhten, ...
Molecular systems biology 17 (7), e10253, 2021
82021
Plasmids for in vivo construction of integrative Candida albicans vectors in Saccharomyces cerevisiae
N Vieira, F Pereira, M Casal, AJP Brown, S Paiva, B Johansson
Yeast 27 (11), 933-939, 2010
42010
Probing the potential of the Shark Panel InDel multiplex v2. 0 on the forensic identification of batoid elasmobranchs
CRL Amaral, A Bitencourt, C Teixeira, F Pereira, DA Silva, A Amorim, ...
Forensic Science International: Genetics Supplement Series 6, e221-e223, 2017
32017
Co-translational assembly counteracts promiscuous interactions
M Seidel, A Becker, F Pereira, JJM Landry, NTD de Azevedo, CM Fusco, ...
bioRxiv, 2021.07. 13.452229, 2021
22021
Homologous recombination deficiency as prognostic marker in metastatic gastric cancer.
N Sousa, C Faustino, LMN Aguas, J Freire, C Coutinho, I Faustino, ...
Journal of Clinical Oncology 37 (15_suppl), 4040-4040, 2019
22019
Yeast chassis design for production of dicarboxylic acids
F Pereira, H Lopes, P Maia, B Meyer, D Konstantinidis, E Kafkia, P Kötter, ...
Elsevier 1, 2018
22018
Directed Evolution of a Mutualistic Community of Organisms for the Production of a Nutrient or a Nutraceutical
D Konstantinidis, KR Patil, F Pereira, CDML Machado, KIM YongKyu
US Patent App. 17/265,829, 2021
12021
3.53 Synthetic Biology: An Overview
 de Carvalho, KG Vanegas, F Pereira, S Theobald, A Takos
Comprehensive Biotechnology 3rd Edition, 659-670, 2019
12019
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