| The specious art of single-cell genomics T Chari, L Pachter PLOS Computational Biology 19 (8), e1011288, 2023 | 211 | 2023 |
| RNA velocity unraveled G Gorin, M Fang, T Chari, L Pachter PLOS Computational Biology 18 (9), e1010492, 2022 | 101 | 2022 |
| Whole-animal multiplexed single-cell RNA-seq reveals transcriptional shifts across Clytia medusa cell types T Chari, B Weissbourd, J Gehring, A Ferraioli, L Leclère, M Herl, F Gao, ... Science Advances 7 (48), eabh1683, 2021 | 64 | 2021 |
| Genome organization around nuclear speckles drives mRNA splicing efficiency P Bhat, A Chow, B Emert, O Ettlin, SA Quinodoz, M Strehle, Y Takei, ... Nature, 1-9, 2024 | 18 | 2024 |
| Whole Animal Multiplexed Single-Cell RNA-Seq Reveals Plasticity of Clytia Medusa Cell Types T Chari, B Weissbourd, J Gehring, A Ferraioli, L Leclère, M Herl, F Gao, ... BioRxiv, 2021.01. 22.427844, 2021 | 12 | 2021 |
| Spectral neural approximations for models of transcriptional dynamics G Gorin, M Carilli, T Chari, L Pachter Biophysical Journal, 2022 | 9 | 2022 |
| Biophysical modeling with variational autoencoders for bimodal, single-cell RNA sequencing data M Carilli, G Gorin, Y Choi, T Chari, L Pachter bioRxiv, 2023 | 8 | 2023 |
| Whole-animal multiplexed singlecell RNA-seq reveals transcriptional shifts across Clytia medusa cell types. Sci Adv. 2021; 7: eabh1683 T Chari, B Weissbourd, J Gehring, A Ferraioli, L Leclère, M Herl | 5 | |
| Biophysically interpretable inference of cell types from multimodal sequencing data T Chari, G Gorin, L Pachter Biorxiv, 2023 | 3 | 2023 |
| Efficient and accurate detection of viral sequences at single-cell resolution reveals novel viruses perturbing host gene expression. L Luebbert, DK Sullivan, M Carilli, KE Hjörleifsson, AV Winnett, T Chari, ... bioRxiv: The Preprint Server for Biology, 2023 | 2 | 2023 |
| Quantitative assessment of single-cell RNA-seq clustering with CONCORDEX K Jackson, AS Booeshaghi, Á Gálvez-Merchán, L Moses, T Chari, ... bioRxiv, 2023.06. 28.546949, 2023 | 2 | 2023 |
| Perturbing the Genome: From Bench to Biophysics T Chari California Institute of Technology, 2024 | | 2024 |
| Stochastic Modeling of Biophysical Responses to Perturbation T Chari, G Gorin, L Pachter bioRxiv, 2024.07. 04.602131, 2024 | | 2024 |
| Efficient and accurate detection of viral sequences at single-cell resolution reveals putative novel viruses perturbing host gene expression L Luebbert, DK Sullivan, M Carilli, KE Hjörleifsson, AV Winnett, T Chari, ... bioRxiv, 2023 | | 2023 |
| Mechanistic modeling with a variational autoencoder for multimodal single-cell RNA sequencing data Supplementary Material M Carilli, G Gorin, Y Choi, T Chari, L Pachter | | 2023 |
| Biophysically informed modeling for mapping the effects of genetic and environmental perturbation on cell states T Chari, G Gorin, L Pachter APS March Meeting Abstracts 2023, N00. 303, 2023 | | 2023 |
| Spectral neural approximations for models of transcriptional dynamics Supplementary Material G Gorin, M Carilli, T Chari, L Pachter | | 2022 |
| The Split Senate T Chari, L Pachter | | 2021 |
| Betamethasone Phosphate Drug Delivery by Biodegradable Ocular Implant T Chari, C Li, R Varghese, Q Yang | | 2017 |
