SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips J Maksimovic, L Gordon, A Oshlack Genome biology 13, 1-12, 2012 | 885 | 2012 |
missMethyl: an R package for analyzing data from Illumina’s HumanMethylation450 platform B Phipson, J Maksimovic, A Oshlack Bioinformatics 32 (2), 286-288, 2015 | 650 | 2015 |
A cross-package Bioconductor workflow for analysing methylation array data J Maksimovic, B Phipson, A Oshlack F1000Research 5 (1281), 2016 | 204 | 2016 |
Differentiation of human embryonic stem cells to HOXA+ hemogenic vasculature that resembles the aorta-gonad-mesonephros ES Ng, L Azzola, FF Bruveris, V Calvanese, B Phipson, K Vlahos, C Hirst, ... Nature biotechnology 34 (11), 1168-1179, 2016 | 185 | 2016 |
Patient-iPSC-derived kidney organoids show functional validation of a ciliopathic renal phenotype and reveal underlying pathogenetic mechanisms TA Forbes, SE Howden, K Lawlor, B Phipson, J Maksimovic, L Hale, ... The American Journal of Human Genetics 102 (5), 816-831, 2018 | 183 | 2018 |
Bacteriophages in gut samples from pediatric Crohn’s disease patients: metagenomic analysis using 454 pyrosequencing J Wagner, J Maksimovic, G Farries, WH Sim, RF Bishop, DJ Cameron, ... Inflammatory bowel diseases 19 (8), 1598-1608, 2013 | 160 | 2013 |
Genome-wide DNA methylation analysis identifies hypomethylated genes regulated by FOXP3 in human regulatory T cells Y Zhang, J Maksimovic, G Naselli, J Qian, M Chopin, ME Blewitt, ... Blood, The Journal of the American Society of Hematology 122 (16), 2823-2836, 2013 | 134 | 2013 |
Gestational diabetes and maternal obesity are associated with epigenome-wide methylation changes in children L Hjort, D Martino, LG Grunnet, H Naeem, J Maksimovic, AH Olsson, ... JCI insight 3 (17), 2018 | 113 | 2018 |
The polycomb repressive complex 2 governs life and death of peripheral T cells Y Zhang, S Kinkel, J Maksimovic, E Bandala-Sanchez, MC Tanzer, ... Blood, The Journal of the American Society of Hematology 124 (5), 737-749, 2014 | 108 | 2014 |
Gene set enrichment analysis for genome-wide DNA methylation data J Maksimovic, A Oshlack, B Phipson Genome Biology 22 (1), 173, 2021 | 94 | 2021 |
Condensin I associates with structural and gene regulatory regions in vertebrate chromosomes JH Kim, T Zhang, NC Wong, N Davidson, J Maksimovic, A Oshlack, ... Nature communications 4 (1), 2537, 2013 | 88 | 2013 |
Removing unwanted variation in a differential methylation analysis of Illumina HumanMethylation450 array data J Maksimovic, JA Gagnon-Bartsch, TP Speed, A Oshlack Nucleic acids research 43 (16), e106-e106, 2015 | 83 | 2015 |
Epigenome-wide analysis in newborn blood spots from monozygotic twins discordant for cerebral palsy reveals consistent regional differences in DNA methylation N Mohandas, S Bass-Stringer, J Maksimovic, K Crompton, YJ Loke, ... Clinical epigenetics 10, 1-15, 2018 | 60 | 2018 |
Genome-scale profiling reveals a subset of genes regulated by DNA methylation that program somatic T-cell phenotypes in humans D Martino, J Maksimovic, JHE Joo, SL Prescott, R Saffery Genes & Immunity 13 (5), 388-398, 2012 | 36 | 2012 |
Stability of gene expression and epigenetic profiles highlights the utility of patient-derived paediatric acute lymphoblastic leukaemia xenografts for investigating molecular … NC Wong, VA Bhadri, J Maksimovic, M Parkinson-Bates, J Ng, JM Craig, ... BMC genomics 15, 1-13, 2014 | 34 | 2014 |
Direct reprogramming to human nephron progenitor-like cells using inducible piggyBac transposon expression of SNAI2-EYA1-SIX1 JM Vanslambrouck, LE Woodard, N Suhaimi, FM Williams, SE Howden, ... Kidney international 95 (5), 1153-1166, 2019 | 22 | 2019 |
DNA methylation biomarkers of future health outcomes in children S Shanthikumar, MR Neeland, J Maksimovic, SC Ranganathan, R Saffery Molecular and Cellular Pediatrics 7, 1-11, 2020 | 18 | 2020 |
Cord Blood CD8+ T Cells Have a Natural Propensity to Express IL-4 in a Fatty Acid Metabolism and Caspase Activation-Dependent Manner Y Zhang, J Maksimovic, B Huang, DP De Souza, G Naselli, H Chen, ... Frontiers in Immunology 9, 879, 2018 | 15 | 2018 |
Epigenetic interplay at the β-globin locus WS Lee, B McColl, J Maksimovic, J Vadolas Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1860 (4), 393-404, 2017 | 14 | 2017 |
Conservation of the ST6Gal I gene and its expression in the mammary gland J Maksimovic, JA Sharp, KR Nicholas, BG Cocks, K Savin Glycobiology 21 (4), 467-481, 2011 | 12 | 2011 |