| ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning L Wei, X Ye, T Sakurai, Z Mu, L Wei Bioinformatics 38 (6), 1514-1524, 2022 | 76 | 2022 |
| ATSE: a peptide toxicity predictor by exploiting structural and evolutionary information based on graph neural network and attention mechanism L Wei, X Ye, Y Xue, T Sakurai, L Wei Briefings in Bioinformatics 22 (5), bbab041, 2021 | 57 | 2021 |
| AFP-MFL: accurate identification of antifungal peptides using multi-view feature learning Y Fang, F Xu, L Wei, Y Jiang, J Chen, L Wei, DQ Wei Briefings in Bioinformatics 24 (1), bbac606, 2023 | 20 | 2023 |
| GSAML-DTA: an interpretable drug-target binding affinity prediction model based on graph neural networks with self-attention mechanism and mutual information J Liao, H Chen, L Wei, L Wei Computers in biology and medicine 150, 106145, 2022 | 18 | 2022 |
| Mdl-cpi: Multi-view deep learning model for compound-protein interaction prediction L Wei, W Long, L Wei Methods 204, 418-427, 2022 | 17 | 2022 |
| SiameseCPP: a sequence-based Siamese network to predict cell-penetrating peptides by contrastive learning X Zhang, L Wei, X Ye, K Zhang, S Teng, Z Li, J Jin, MJ Kim, T Sakurai, ... Briefings in Bioinformatics 24 (1), bbac545, 2023 | 12 | 2023 |
| PSSP-MVIRT: peptide secondary structure prediction based on a multi-view deep learning architecture X Cao, W He, Z Chen, Y Li, K Wang, H Zhang, L Wei, L Cui, R Su, L Wei Briefings in Bioinformatics 22 (6), bbab203, 2021 | 11 | 2021 |
| iDNA-MT: identification DNA modification sites in multiple species by using multi-task learning based a neural network tool X Yang, X Ye, X Li, L Wei Frontiers in genetics 12, 663572, 2021 | 9 | 2021 |
| MultiscaleDTA: A multiscale-based method with a self-attention mechanism for drug-target binding affinity prediction H Chen, D Li, J Liao, L Wei, L Wei Methods 207, 103-109, 2022 | 8 | 2022 |
| Better performance with transformer: CPPFormer in the precise prediction of cell-penetrating peptides Y Xue, X Ye, L Wei, X Zhang, T Sakurai, L Wei Current Medicinal Chemistry 29 (5), 881-893, 2022 | 3 | 2022 |
| HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer X Xu, C Xu, W He, L Wei, H Li, J Zhou, R Zhang, Y Wang, Y Xiong, X Gao Bioinformatics, btae364, 2024 | | 2024 |
| ToxinMI: improving peptide toxicity prediction by fusing multimodal information based on mutual information L Wei, X Ye, T Sakurai Proceedings of the Conference on Research in Adaptive and Convergent Systems …, 2022 | | 2022 |
