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Petr Škoda
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PrankWeb: a web server for ligand binding site prediction and visualization
L Jendele, R Krivak, P Skoda, M Novotny, D Hoksza
Nucleic acids research 47 (W1), W345-W349, 2019
2832019
PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures
D Jakubec, P Skoda, R Krivak, M Novotny, D Hoksza
Nucleic Acids Research 50 (W1), W593-W597, 2022
822022
PDBe-KB: a community-driven resource for structural and functional annotations
M Varadi, J Berrisford, M Deshpande, SS Nair, A Gutmanas, D Armstrong, ...
Nucleic Acids Research, 2019
752019
Survey of tools for Linked Data consumption
J Klímek, P Škoda, M Nečaský
Semantic Web 10 (4), 665-720, 2019
472019
Molpher: a software framework for systematic chemical space exploration
D Hoksza, P Škoda, M Voršilák, D Svozil
J Cheminform 3, 32, 2014
452014
LinkedPipes ETL: Evolved linked data preparation
J Klímek, P Škoda, M Nečaský
European Semantic Web Conference, 95-100, 2016
352016
PDBe-KB: collaboratively defining the biological context of structural data
Nucleic acids research 50 (D1), D534-D542, 2022
342022
UnifiedViews: An ETL framework for sustainable RDF data processing
T Knap, M Kukhar, B Macháč, P Škoda, J Tomeš, J Vojt
The Semantic Web: ESWC 2014 Satellite Events: ESWC 2014 Satellite Events …, 2014
292014
UnifiedViews: Towards ETL Tool for Simple yet Powerfull RDF Data Management⋆
T Knap, P Škoda, J Klımek, M Necaský
232015
UnifiedViews: an ETL tool for RDF data management
T Knap, P Hanečák, J Klímek, C Mader, M Nečaský, B Van Nuffelen, ...
Semantic Web 9 (5), 661-676, 2018
202018
LinkedPipes ETL in use: practical publication and consumption of linked data
J Klímek, P Škoda
Proceedings of the 19th International Conference on Information Integration …, 2017
152017
Benchmarking platform for ligand-based virtual screening
P Škoda, D Hoksza
2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2016
122016
Requirements on Linked Data Consumption Platform.
J Klímek, P Skoda, M Necaský
LDOW@ WWW, 2016
122016
Exploration of topological torsion fingerprints
P Skoda, D Hoksza
Bioinformatics and Biomedicine (BIBM), 2015 IEEE International Conference on …, 2015
11*2015
LinkedPipes DCAT-AP Viewer: A Native DCAT-AP Data Catalog.
J Klímek, P Skoda
ISWC (P&D/Industry/BlueSky), 2018
92018
Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites
J Jelínek, P Škoda, D Hoksza
Computational Advances in Bio and Medical Sciences (ICCABS), 2016 IEEE 6th …, 2016
92016
Evaluation framework for search methods focused on dataset findability in open data catalogs
P Škoda, D Bernhauer, M Nečaský, J Klímek, T Skopal
Proceedings of the 22nd International Conference on Information Integration …, 2020
62020
Reusable transformations of Data Cube Vocabulary datasets from the fiscal domain
J Mynarz, J Klímek, M Dudáš, P Škoda, C Engels, FA Musyaffa, V Svátek
Proceedings of the 4th International Workshop on Semantic Statistics co …, 2016
62016
Knowledge graphs for the life sciences: Recent developments, challenges and opportunities
J Chen, H Dong, J Hastings, E Jiménez-Ruiz, V López, P Monnin, ...
arXiv preprint arXiv:2309.17255, 2023
52023
Improving quality of ligand-binding site prediction with Bayesian optimization
R Krivák, D Hoksza, P Škoda
2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2017
52017
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