| An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection X Wang, DD Kang, K Shen, C Song, S Lu, LC Chang, SG Liao, Z Huo, ... Bioinformatics 28 (19), 2534-2536, 2012 | 216 | 2012 |
| Papillomavirus genomes associate with BRD4 to replicate at fragile sites in the host genome MK Jang, K Shen, AA McBride PLoS pathogens 10 (5), e1004117, 2014 | 117 | 2014 |
| The effect of Rho kinase inhibition on long-term keratinocyte proliferation is rapid and conditional S Chapman, DH McDermott, K Shen, MK Jang, AA McBride Stem cell research & therapy 5, 1-11, 2014 | 110 | 2014 |
| Meta-analysis for pathway enrichment analysis when combining multiple genomic studies K Shen, GC Tseng Bioinformatics 26 (10), 1316-1323, 2010 | 106 | 2010 |
| Systemic cytokine profiles in Strongyloides stercoralis infection and alterations following treatment R Anuradha, S Munisankar, Y Bhootra, J Jagannathan, C Dolla, ... Infection and immunity 84 (2), 425-431, 2016 | 57 | 2016 |
| A hamster model for Marburg virus infection accurately recapitulates Marburg hemorrhagic fever A Marzi, L Banadyga, E Haddock, T Thomas, K Shen, EJ Horne, DP Scott, ... Scientific reports 6 (1), 39214, 2016 | 50 | 2016 |
| Lung cancer screening: from imaging to biomarker D Xiang, B Zhang, D Doll, K Shen, G Kloecker, C Freter Biomarker research 1, 1-10, 2013 | 49 | 2013 |
| Prognostic significance of liver metastasis in durvalumab-treated lung cancer patients S Sridhar, L Paz-Ares, H Liu, K Shen, C Morehouse, N Rizvi, NH Segal, ... Clinical Lung Cancer 20 (6), e601-e608, 2019 | 47 | 2019 |
| Biomarker detection in the integration of multiple multi-class genomic studies S Lu, J Li, C Song, K Shen, GC Tseng Bioinformatics 26 (3), 333-340, 2010 | 45 | 2010 |
| On-target pharmacodynamic activity of the PI3K inhibitor copanlisib in paired biopsies from patients with malignant lymphoma and advanced solid tumors F Morschhauser, JP Machiels, G Salles, S Rottey, SAJ Rule, ... Molecular cancer therapeutics 19 (2), 468-478, 2020 | 40 | 2020 |
| In depth annotation of the Anopheles gambiae mosquito midgut transcriptome A Padron, A Molina-Cruz, M Quinones, JMC Ribeiro, U Ramphul, ... BMC genomics 15, 1-14, 2014 | 40 | 2014 |
| Cell line derived multi-gene predictor of pathologic response to neoadjuvant chemotherapy in breast cancer: a validation study on US Oncology 02-103 clinical trial K Shen, Y Qi, N Song, C Tian, SD Rice, MJ Gabrin, SL Brower, ... BMC medical genomics 5, 1-8, 2012 | 39 | 2012 |
| Modulation of pro-and anti-inflammatory cytokines in active and latent tuberculosis by coexistent Strongyloides stercoralis infection PJ George, NP Kumar, J Jaganathan, C Dolla, P Kumaran, D Nair, ... Tuberculosis 95 (6), 822-828, 2015 | 28 | 2015 |
| Ratio adjustment and calibration scheme for gene-wise normalization to enhance microarray inter-study prediction C Cheng, K Shen, C Song, J Luo, GC Tseng Bioinformatics 25 (13), 1655-1661, 2009 | 28 | 2009 |
| Global selective sweep of a highly inbred genome of the cattle parasite Neospora caninum A Khan, AW Fujita, N Randle, J Regidor-Cerrillo, JS Shaik, K Shen, ... Proceedings of the National Academy of Sciences 116 (45), 22764-22773, 2019 | 27 | 2019 |
| Distinct genes related to drug response identified in ER positive and ER negative breast cancer cell lines K Shen, SD Rice, DA Gingrich, D Wang, Z Mi, C Tian, Z Ding, SL Brower, ... PloS one 7 (7), e40900, 2012 | 25 | 2012 |
| A systematic evaluation of multi-gene predictors for the pathological response of breast cancer patients to chemotherapy K Shen, N Song, Y Kim, C Tian, SD Rice, MJ Gabrin, WF Symmans, ... PloS one 7 (11), e49529, 2012 | 24 | 2012 |
| Kissing-loop interaction between 5′ and 3′ ends of tick-borne Langat virus genome ‘bridges the gap’between mosquito-and tick-borne flaviviruses in mechanisms of viral RNA … KA Tsetsarkin, G Liu, K Shen, AG Pletnev Nucleic acids research 44 (7), 3330-3350, 2016 | 22 | 2016 |
| Analysis of chemotherapeutic response heterogeneity and drug clustering based on mechanism of action using an in vitro assay SD Rice, JM Heinzman, SL Brower, PR Ervin, N Song, K Shen, D Wang Anticancer research 30 (7), 2805-2811, 2010 | 21 | 2010 |
| Association of liver metastases (LM) with survival in NSCLC patients treated with durvalumab (D) in two independent clinical trials. LG Paz-Ares, K Shen, BW Higgs, C Morehouse, NA Rizvi, NH Segal, X Jin, ... Journal of Clinical Oncology 35 (15_suppl), 3038-3038, 2017 | 12 | 2017 |
