Detecting individual sites subject to episodic diversifying selection B Murrell, JO Wertheim, S Moola, T Weighill, K Scheffler, ... PLoS genetics 8 (7), e1002764, 2012 | 1704* | 2012 |
Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection MD Smith, JO Wertheim, S Weaver, B Murrell, K Scheffler, ... Molecular biology and evolution 32 (5), 1342-1353, 2015 | 641 | 2015 |
RELAX: detecting relaxed selection in a phylogenetic framework JO Wertheim, B Murrell, MD Smith, SL Kosakovsky Pond, K Scheffler Molecular biology and evolution 32 (3), 820-832, 2015 | 576* | 2015 |
The origins of SARS-CoV-2: A critical review EC Holmes, SA Goldstein, AL Rasmussen, DL Robertson, ... Cell 184 (19), 4848-4856, 2021 | 550 | 2021 |
Gene-wide identification of episodic selection B Murrell, S Weaver, MD Smith, JO Wertheim, S Murrell, A Aylward, ... Molecular biology and evolution 32 (5), 1365-1371, 2015 | 502 | 2015 |
The Emergence of SARS-CoV-2 in Europe and North America M Worobey, J Pekar, BB Larsen, MI Nelson, V Hill, JB Joy, A Rambaut, ... Science 370 (6516), 564-570, 2020 | 419 | 2020 |
The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic M Worobey, JI Levy, L Malpica Serrano, A Crits-Christoph, JE Pekar, ... Science 377 (6609), 951-959, 2022 | 383* | 2022 |
A case for the ancient origin of coronaviruses JO Wertheim, DKW Chu, JSM Peiris, SL Kosakovsky Pond, LLM Poon Journal of Virology 87 (12), 7039-7045, 2013 | 363* | 2013 |
Dating the age of the SIV lineages that gave rise to HIV-1 and HIV-2 JO Wertheim, M Worobey PLoS computational biology 5 (5), e1000377, 2009 | 265 | 2009 |
The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages DP Martin, S Weaver, H Tegally, JE San, SD Shank, E Wilkinson, ... Cell 184 (20), 5189-5200. e7, 2021 | 264 | 2021 |
The global transmission network of HIV-1 JO Wertheim, AJ Leigh Brown, NL Hepler, SR Mehta, DD Richman, ... The Journal of infectious diseases 209 (2), 304-313, 2014 | 244 | 2014 |
The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2 JE Pekar, A Magee, E Parker, N Moshiri, K Izhikevich, JL Havens, ... Science 377 (6609), 960-966, 2022 | 226* | 2022 |
HIV-TRACE (TRAnsmission Cluster Engine): a tool for large scale molecular epidemiology of HIV-1 and other rapidly evolving pathogens SL Kosakovsky Pond, S Weaver, AJ Leigh Brown, JO Wertheim Molecular biology and evolution 35 (7), 1812-1819, 2018 | 224 | 2018 |
Using HIV networks to inform real time prevention interventions SJ Little, SL Kosakovsky Pond, CM Anderson, JA Young, JO Wertheim, ... PloS one 9 (6), e98443, 2014 | 217 | 2014 |
Purifying selection can obscure the ancient age of viral lineages JO Wertheim, SL Kosakovsky Pond Molecular biology and evolution 28 (12), 3355-3365, 2011 | 213 | 2011 |
Timing the SARS-CoV-2 index case in Hubei province J Pekar, M Worobey, N Moshiri, K Scheffler, JO Wertheim Science 372 (6540), 412-417, 2021 | 199 | 2021 |
Social and genetic networks of HIV-1 transmission in New York City JO Wertheim, SL Kosakovsky Pond, LA Forgione, SR Mehta, B Murrell, ... PLoS pathogens 13 (1), e1006000, 2017 | 195* | 2017 |
Evolutionary origins of human herpes simplex viruses 1 and 2 JO Wertheim, MD Smith, DM Smith, K Scheffler, SL Kosakovsky Pond Mol. Biol. Evol 31, 2356-2364, 2014 | 176 | 2014 |
Using molecular HIV surveillance data to understand transmission between subpopulations in the United States AM Oster, JO Wertheim, AL Hernandez, MCB Ocfemia, N Saduvala, ... JAIDS Journal of Acquired Immune Deficiency Syndromes 70 (4), 444-451, 2015 | 165 | 2015 |
Identifying clusters of recent and rapid HIV transmission through analysis of molecular surveillance data AM Oster, AM France, N Panneer, MCB Ocfemia, E Campbell, ... JAIDS Journal of Acquired Immune Deficiency Syndromes 79 (5), 543-550, 2018 | 136 | 2018 |