| The making of a pest: the evolution of a fruit-penetrating ovipositor in Drosophila suzukii and related species J Atallah, L Teixeira, R Salazar, G Zaragoza, A Kopp Proceedings of the Royal Society B: Biological Sciences 281 (1781), 20132840, 2014 | 415 | 2014 |
| Phylogenomics resolves evolutionary relationships among ants, bees, and wasps BR Johnson, ML Borowiec, JC Chiu, EK Lee, J Atallah, PS Ward Current Biology 23 (20), 2058-2062, 2013 | 218 | 2013 |
| Comparative validation of the D. melanogaster modENCODE transcriptome annotation ZX Chen, D Sturgill, J Qu, H Jiang, S Park, N Boley, AM Suzuki, ... Genome research 24 (7), 1209-1223, 2014 | 177 | 2014 |
| Large-scale coding sequence change underlies the evolution of postdevelopmental novelty in honey bees WC Jasper, TA Linksvayer, J Atallah, D Friedman, JC Chiu, BR Johnson Molecular Biology and Evolution 32 (2), 334-346, 2015 | 95 | 2015 |
| The importance of tissue specificity for RNA-seq: highlighting the errors of composite structure extractions BR Johnson, J Atallah, DC Plachetzki BMC genomics 14, 1-8, 2013 | 65 | 2013 |
| Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut M Shelomi, WC Jasper, J Atallah, LS Kimsey, BR Johnson BMC genomics 15, 1-18, 2014 | 50 | 2014 |
| Evolution of maternal and zygotic mRNA complements in the early Drosophila embryo J Atallah, SE Lott PLoS genetics 14 (12), e1007838, 2018 | 32 | 2018 |
| Developmental constraints and convergent evolution in Drosophila sex comb formation J Atallah, NH Liu, P Dennis, A Hon, EW Larsen Evolution & Development 11 (2), 205-218, 2009 | 28 | 2009 |
| Cell dynamics and developmental bias in the ontogeny of a complex sexually dimorphic trait in Drosophila melanogaster J Atallah, NH Liu, P Dennis, A Hon, D Godt, EW Larsen Evolution & development 11 (2), 191-204, 2009 | 25 | 2009 |
| Sex-specific repression of dachshund is required for Drosophila sex comb development J Atallah, G Vurens, S Mavong, A Mutti, D Hoang, A Kopp Developmental biology 386 (2), 440-447, 2014 | 23 | 2014 |
| Evolution of Drosophila sex comb length illustrates the inextricable interplay between selection and variation JN Malagón, A Ahuja, G Sivapatham, J Hung, J Lee, SA Muñoz-Gómez, ... Proceedings of the National Academy of Sciences 111 (39), E4103-E4109, 2014 | 21 | 2014 |
| ClassifyTE: a stacking-based prediction of hierarchical classification of transposable elements M Panta, A Mishra, MT Hoque, J Atallah Bioinformatics 37 (17), 2529-2536, 2021 | 19 | 2021 |
| The environmental and genetic regulation of obake expressivity: morphogenetic fields as evolvable systems J Atallah, I Dworkin, U Cheung, A Greene, B Ing, L Leung, E Larsen Evolution & Development 6 (2), 114-122, 2004 | 19 | 2004 |
| Many ways to make a novel structure: a new mode of sex comb development in Drosophilidae J Atallah, H Watabe, A Kopp Evolution & Development 14 (6), 476-483, 2012 | 18 | 2012 |
| The utility of shallow RNA-seq for documenting differential gene expression in genes with high and low levels of expression J Atallah, DC Plachetzki, WC Jasper, BR Johnson PLoS One 8 (12), e84160, 2013 | 15 | 2013 |
| A standardized nomenclature and atlas of the female terminalia of Drosophila melanogaster EW McQueen, M Afkhami, J Atallah, JM Belote, N Gompel, Y Heifetz, ... Fly 16 (1), 128-151, 2022 | 11 | 2022 |
| The development and evolution of complex patterns: the Drosophila sex comb as a model system J Atallah University of Toronto, 2008 | 10 | 2008 |
| Genotype–phenotype mapping: developmental biology confronts the toolkit paradox J Atallah, E Larsen International review of cell and molecular biology 278, 119-148, 2009 | 8 | 2009 |
| Epigenesis, preformation, and the Humpty Dumpty problem EW Larsen, J Atallah Epigenetics: Linking genotype and phenotype in development and evolution …, 2011 | 5 | 2011 |
| Evolution of larval segment position across 12 Drosophila species G Kalay, J Atallah, NC Sierra, AM Tang, AE Crofton, MK Murugesan, ... Evolution 74 (7), 1409-1422, 2020 | 4 | 2020 |
