Oral administration of Blautia wexlerae ameliorates obesity and type 2 diabetes via metabolic remodeling of the gut microbiota K Hosomi, M Saito, J Park, H Murakami, N Shibata, M Ando, T Nagatake, ... Nature communications 13 (1), 4477, 2022 | 134 | 2022 |
TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery YA Chen, LP Tripathi, K Mizuguchi PloS one 6 (3), e17844, 2011 | 134 | 2011 |
Targeting BIG3–PHB2 interaction to overcome tamoxifen resistance in breast cancer cells T Yoshimaru, M Komatsu, T Matsuo, YA Chen, Y Murakami, K Mizuguchi, ... Nature communications 4 (1), 2443, 2013 | 110 | 2013 |
Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks A Mohsen, J Park, YA Chen, H Kawashima, K Mizuguchi BMC bioinformatics 20, 1-10, 2019 | 72 | 2019 |
Inhibitory roles of signal transducer and activator of transcription 3 in antitumor immunity during carcinogen-induced lung tumorigenesis S Ihara, H Kida, H Arase, LP Tripathi, YA Chen, T Kimura, M Yoshida, ... Cancer research 72 (12), 2990-2999, 2012 | 64 | 2012 |
Comprehensive analysis of gut microbiota of a healthy population and covariates affecting microbial variation in two large Japanese cohorts J Park, K Kato, H Murakami, K Hosomi, K Tanisawa, T Nakagata, H Ohno, ... BMC microbiology 21 (1), 151, 2021 | 41 | 2021 |
An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework YA Chen, LP Tripathi, K Mizuguchi Database 2016, baw009, 2016 | 37 | 2016 |
Understanding the biological context of NS5A–host interactions in HCV infection: a network-based approach LP Tripathi, H Kambara, YA Chen, Y Nishimura, K Moriishi, T Okamoto, ... Journal of proteome research 12 (6), 2537-2551, 2013 | 36 | 2013 |
BIG3 inhibits the estrogen-dependent nuclear translocation of PHB2 via multiple karyopherin-alpha proteins in breast cancer cells NH Kim, T Yoshimaru, YA Chen, T Matsuo, M Komatsu, Y Miyoshi, ... PLoS One 10 (6), e0127707, 2015 | 32 | 2015 |
Integrated pathway clusters with coherent biological themes for target prioritisation YA Chen, LP Tripathi, BH Dessailly, J Nystroem-Persson, S Ahmad, ... PloS one 9 (6), e99030, 2014 | 26 | 2014 |
Pathway-based analysis of genome-wide siRNA screens reveals the regulatory landscape of APP processing LM Camargo, XD Zhang, P Loerch, RM Caceres, SD Marine, P Uva, ... PloS one 10 (2), e0115369, 2015 | 22 | 2015 |
The TargetMine data warehouse: enhancement and updates YA Chen, LP Tripathi, T Fujiwara, T Kameyama, MN Itoh, K Mizuguchi Frontiers in genetics 10, 934, 2019 | 21 | 2019 |
Dietary vitamin B1 intake influences gut microbial community and the consequent production of short-chain fatty acids J Park, K Hosomi, H Kawashima, YA Chen, A Mohsen, H Ohno, K Konishi, ... Nutrients 14 (10), 2078, 2022 | 17 | 2022 |
A-kinase anchoring protein BIG3 coordinates oestrogen signalling in breast cancer cells T Yoshimaru, M Ono, Y Bando, YA Chen, K Mizuguchi, H Shima, ... Nature communications 8 (1), 15427, 2017 | 17 | 2017 |
Proteomic analysis of hepatitis C virus (HCV) core protein transfection and host regulator PA28γ knockout in HCV pathogenesis: a network-based study LP Tripathi, H Kambara, K Moriishi, E Morita, T Abe, Y Mori, YA Chen, ... Journal of proteome research 11 (7), 3664-3679, 2012 | 17 | 2012 |
Brefeldin A-inhibited guanine nucleotide-exchange protein 3 (BIG3) is predicted to interact with its partner through an ARM-type α-helical structure YA Chen, Y Murakami, S Ahmad, T Yoshimaru, T Katagiri, K Mizuguchi BMC Research Notes 7, 1-8, 2014 | 12 | 2014 |
Integrating sequence and gene expression information predicts genome-wide DNA-binding proteins and suggests a cooperative mechanism S Ahmad, P Prathipati, LP Tripathi, YA Chen, A Arya, Y Murakami, ... Nucleic Acids Research 46 (1), 54-70, 2018 | 11 | 2018 |
Sagace: a web-based search engine for biomedical databases in Japan M Morita, Y Igarashi, M Ito, YA Chen, C Nagao, Y Sakaguchi, R Sakate, ... BMC research notes 5, 1-5, 2012 | 11 | 2012 |
MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data YA Chen, J Park, Y Natsume-Kitatani, H Kawashima, A Mohsen, ... PLoS One 15 (12), e0243609, 2020 | 10 | 2020 |
Network-based analysis of host-pathogen interactions LP Tripathi, YA Chen, K Mizuguchi, E Morita Encyclopedia of bioinformatics and computational biology, 932-937, 2019 | 10 | 2019 |