SIRAH: a structurally unbiased coarse-grained force field for proteins with aqueous solvation and long-range electrostatics L Darré, MR Machado, AF Brandner, HC González, S Ferreira, S Pantano Journal of chemical theory and computation 11 (2), 723-739, 2015 | 136 | 2015 |
Modelling lipid systems in fluid with Lattice Boltzmann Molecular Dynamics simulations and hydrodynamics A F. Brandner, S Timr, S Melchionna, P Derreumaux, M Baaden, ... Scientific reports 9 (1), 16450, 2019 | 28 | 2019 |
Exploring DNA dynamics within oligonucleosomes with coarse-grained simulations: SIRAH force field extension for protein-DNA complexes A Brandner, A Schüller, F Melo, S Pantano Biochemical and biophysical research communications 498 (2), 319-326, 2018 | 28 | 2018 |
Serotonin alters the phase equilibrium of a ternary mixture of phospholipids and cholesterol O Engberg, A Bochicchio, AF Brandner, A Gupta, S Dey, RA Böckmann, ... Frontiers in Physiology 11, 578868, 2020 | 21 | 2020 |
Assessing the accuracy of the SIRAH force field to model DNA at coarse grain level PD Dans, L Darré, MR Machado, A Zeida, AF Brandner, S Pantano Advances in Bioinformatics and Computational Biology: 8th Brazilian …, 2013 | 16 | 2013 |
Spontaneous membrane nanodomain formation in the absence or presence of the neurotransmitter serotonin A Bochicchio, AF Brandner, O Engberg, D Huster, RA Böckmann Frontiers in Cell and Developmental Biology 8, 601145, 2020 | 12 | 2020 |
Physics-based oligomeric models of the yeast mitofusin Fzo1 at the molecular scale in the context of membrane docking A Brandner, D De Vecchis, M Baaden, MM Cohen, A Taly Mitochondrion 49, 234-244, 2019 | 12 | 2019 |
A molecular perspective on mitochondrial membrane fusion: from the key players to oligomerization and tethering of mitofusin D De Vecchis, A Brandner, M Baaden, MM Cohen, A Taly The Journal of Membrane Biology 252, 293-306, 2019 | 10 | 2019 |
Structural basis for host recognition and superinfection exclusion by bacteriophage T5 B van den Berg, A Silale, A Baslé, AF Brandner, SL Mader, S Khalid Proceedings of the National Academy of Sciences 119 (42), e2211672119, 2022 | 8 | 2022 |
Structural dataset from microsecond-long simulations of yeast mitofusin Fzo1 in the context of membrane docking A Brandner, D De Vecchis, M Baaden, MM Cohen, A Taly Data in brief 26, 104460, 2019 | 3 | 2019 |
IDH3γ functions as a redox switch regulating mitochondrial energy metabolism and contractility in the heart MS Nanadikar, AM Vergel Leon, J Guo, GJ van Belle, A Jatho, ES Philip, ... Nature Communications 14 (1), 2123, 2023 | 2 | 2023 |
Role of lipid nanodomains for inhibitory FcγRIIb function F Spiegel, MFW Trollmann, S Kara, M Pöhnl, AF Brandner, ... bioRxiv, 2023.05. 09.540011, 2023 | | 2023 |
IDH3γ serves as a redox switch that regulates mitochondrial energy metabolism and contractility in the heart under oxidative stress M Nanadikar, AV Leon, J Guo, G van Belle, A Jatho, A Brandner, ... | | 2022 |
Structural basis for host recognition and superinfection exclusion by bacteriophage T5. A Silale, A Baslé, AF Brandner, SL Mader, S Khalid Proc Natl Acad Sci USA, 2022 | | 2022 |
Effect of serotonin on membrane domain formation AF Brandner, A Bochicchio, D Huster, RA Boeckmann EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 50 (SUPPL 1), 168-168, 2021 | | 2021 |
Modelling a vesicle-based nano-reactor for confined enzymatic activity F Sterpone, S Timr, A Brandner GENCI, 2019 | | 2019 |
Advancing Multi-Scale Simulation Methods for Biological Membrane Systems AF Brandner, S Timr, S Melchionna, P Derreumaux, M Baaden, ... Biophysical Journal 116 (3), 373a-374a, 2019 | | 2019 |