Applications of next-generation sequencing to phylogeography and phylogenetics JE McCormack, SM Hird, AJ Zellmer, BC Carstens, RT Brumfield Molecular phylogenetics and evolution 66 (2), 526-538, 2013 | 730 | 2013 |
Comparative gut microbiota of 59 neotropical bird species SM Hird, C Sánchez, BC Carstens, RT Brumfield Frontiers in microbiology 6, 1403, 2015 | 264 | 2015 |
Evolutionary biology needs wild microbiomes SM Hird Frontiers in microbiology 8, 725, 2017 | 223 | 2017 |
Ancient hybridization and mitochondrial capture between two species of chipmunks JM Good, S Hird, N Reid, JR Demboski, SJ Steppan, TR MARTIN‐NIMS, ... Molecular ecology 17 (5), 1313-1327, 2008 | 214 | 2008 |
Sampling locality is more detectable than taxonomy or ecology in the gut microbiota of the brood-parasitic Brown-headed Cowbird (Molothrus ater) SM Hird, BC Carstens, SW Cardiff, DL Dittmann, RT Brumfield PeerJ 2, e321, 2014 | 159 | 2014 |
Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences JE McCormack, JM Maley, SM Hird, EP Derryberry, GR Graves, ... Molecular Phylogenetics and Evolution 62 (1), 397-406, 2012 | 111 | 2012 |
Evolution of the indoor biome LJ Martin, RI Adams, A Bateman, HM Bik, J Hawks, SM Hird, D Hughes, ... Trends in Ecology & Evolution 30 (4), 223-232, 2015 | 104 | 2015 |
Poor fit to the multispecies coalescent is widely detectable in empirical data NM Reid, SM Hird, JM Brown, TA Pelletier, JD McVay, JD Satler, ... Systematic Biology 63 (3), 322-333, 2014 | 92 | 2014 |
Avian gut microbiomes taking flight KH Bodawatta, SM Hird, K Grond, M Poulsen, KA Jønsson Trends in microbiology 30 (3), 268-280, 2022 | 84 | 2022 |
Deep Phylogeographic Structure and Environmental Differentiation in the Carnivorous Plant Sarracenia alata AJ Zellmer, MM Hanes, SM Hird, BC Carstens Systematic Biology 61 (5), 763-777, 2012 | 82 | 2012 |
The carnivorous pale pitcher plant harbors diverse, distinct, and time-dependent bacterial communities MM Koopman, DM Fuselier, S Hird, BC Carstens Applied and Environmental Microbiology 76 (6), 1851-1860, 2010 | 82 | 2010 |
Evolutionary signal in the gut microbiomes of 74 bird species from Equatorial Guinea DC Capunitan, O Johnson, RS Terrill, SM Hird Molecular Ecology 29 (4), 829-847, 2020 | 70 | 2020 |
Divergence with gene flow within the recent chipmunk radiation (Tamias) J Sullivan, JR Demboski, KC Bell, S Hird, B Sarver, N Reid, JM Good Heredity 113 (3), 185-194, 2014 | 69 | 2014 |
Assessment of gene flow across a hybrid zone in red‐tailed chipmunks (Tamias ruficaudus) S Hird, J Sullivan Molecular Ecology 18 (14), 3097-3109, 2009 | 54 | 2009 |
Community-level differences in the microbiome of healthy wild mallards and those infected by influenza A viruses HH Ganz, L Doroud, AJ Firl, SM Hird, JA Eisen, WM Boyce MSystems 2 (1), 10.1128/msystems. 00188-16, 2017 | 45* | 2017 |
PRGmatic: an efficient pipeline for collating genome‐enriched second‐generation sequencing data using a ‘provisional‐reference genome’ SM Hird, RT Brumfield, BC Carstens Molecular Ecology Resources 11 (4), 743-748, 2011 | 37 | 2011 |
Rapid and accurate species tree estimation for phylogeographic investigations using replicated subsampling S Hird, L Kubatko, B Carstens Molecular Phylogenetics and Evolution 57 (2), 888-898, 2010 | 34 | 2010 |
The cloacal microbiome of five wild duck species varies by species and influenza A virus infection status SM Hird, H Ganz, JA Eisen, WM Boyce MSphere 3 (5), 10.1128/msphere. 00382-18, 2018 | 33 | 2018 |
No evidence for phylosymbiosis in western chipmunk species K Grond, KC Bell, JR Demboski, M Santos, JM Sullivan, SM Hird FEMS microbiology ecology 96 (1), fiz182, 2020 | 32 | 2020 |
Spatial heterogeneity of the shorebird gastrointestinal microbiome K Grond, H Guilani, SM Hird Royal Society Open Science 7 (1), 191609, 2020 | 23 | 2020 |