| Construction, Model-Based Analysis, and Characterization of a Promoter Library for Fine-Tuned Gene Expression in Bacillus subtilis D Liu, Z Mao, J Guo, L Wei, H Ma, Y Tang, T Chen, Z Wang, X Zhao ACS synthetic biology 7 (7), 1785-1797, 2018 | 81 | 2018 |
| Characterization and evolution of microRNA genes derived from repetitive elements and duplication events in plants J Sun, M Zhou, Z Mao, C Li PloS one 7 (4), e34092, 2012 | 58 | 2012 |
| Integrating thermodynamic and enzymatic constraints into genome-scale metabolic models X Yang, Z Mao, X Zhao, R Wang, P Zhang, J Cai, C Xue, H Ma Metabolic Engineering 67, 133-144, 2021 | 35 | 2021 |
| Model-based reconstruction of synthetic promoter library in Corynebacterium glutamicum S Zhang, D Liu, Z Mao, Y Mao, H Ma, T Chen, X Zhao, Z Wang Biotechnology letters 40, 819-827, 2018 | 35 | 2018 |
| ECMpy, a simplified workflow for constructing enzymatic constrained metabolic network model Z Mao, X Zhao, X Yang, P Zhang, J Du, Q Yuan, H Ma Biomolecules 12 (1), 65, 2022 | 31 | 2022 |
| A novel wheat germ polysaccharide: Structural characterization, potential antioxidant activities and mechanism L Yun, T Wu, Z Mao, W Li, M Zhang, X Sun International Journal of Biological Macromolecules 165, 1978-1987, 2020 | 22 | 2020 |
| Systematic analysis of genomic organization and structure of long non-coding RNAs in the human genome J Sun, M Zhou, ZT Mao, DP Hao, Z Wang, CX Li FEBS letters 587 (7), 976-982, 2013 | 21 | 2013 |
| CAVE: a cloud-based platform for analysis and visualization of metabolic pathways Z Mao, Q Yuan, H Li, Y Zhang, Y Huang, C Yang, R Wang, Y Yang, Y Wu, ... Nucleic Acids Research 51 (W1), W70-W77, 2023 | 18 | 2023 |
| Enzyme commission number prediction and benchmarking with hierarchical dual-core multitask learning framework Z Shi, R Deng, Q Yuan, Z Mao, R Wang, H Li, X Liao, H Ma Research 6, 0153, 2023 | 16 | 2023 |
| Construction and Analysis of an Enzyme-Constrained Metabolic Model of Corynebacterium glutamicum J Niu, Z Mao, Y Mao, K Wu, Z Shi, Q Yuan, J Cai, H Ma Biomolecules 12 (10), 1499, 2022 | 15 | 2022 |
| ecBSU1: A Genome-Scale Enzyme-Constrained Model of Bacillus subtilis Based on the ECMpy Workflow K Wu, Z Mao, Y Mao, J Niu, J Cai, Q Yuan, L Yun, X Liao, Z Wang, H Ma Microorganisms 11 (1), 178, 2023 | 14 | 2023 |
| Analyzing the genetic characteristics of a tryptophan-overproducing Escherichia coli D Ding, D Bai, J Li, Z Mao, Y Zhu, P Liu, J Lin, H Ma, D Zhang Bioprocess and Biosystems Engineering 44, 1685-1697, 2021 | 12 | 2021 |
| Data-driven synthetic cell factories development for industrial biomanufacturing Z Shi, P Liu, X Liao, Z Mao, J Zhang, Q Wang, J Sun, H Ma, Y Ma BioDesign Research 2022, 2022 | 9 | 2022 |
| ERMer: a serverless platform for navigating, analyzing, and visualizing Escherichia coli regulatory landscape through graph database Z Mao, R Wang, H Li, Y Huang, Q Zhang, X Liao, H Ma Nucleic Acids Research 50 (W1), W298-W304, 2022 | 8 | 2022 |
| Whole-Genome Sequencing and Analysis of the White-Rot Fungus Ceriporia lacerata Reveals Its Phylogenetic Status and the Genetic Basis of Lignocellulose … Z Mao, P Yang, H Liu, Y Mao, Y Lei, D Hou, H Ma, X Liao, W Jiang Frontiers in Microbiology 13, 880946, 2022 | 6 | 2022 |
| 基于酶约束的代谢网络模型研究进展及其应用 赵欣， 杨雪， 毛志涛， 马红武 生物工程学报 35 (10), 1914-1924, 2019 | 6 | 2019 |
| iMTBGO: an algorithm for integrating metabolic networks with transcriptomes based on gene ontology analysis Z Mao, H Ma Current Genomics 20 (4), 252-259, 2019 | 6 | 2019 |
| ECMpy 2.0: A Python package for automated construction and analysis of enzyme-constrained models Z Mao, J Niu, J Zhao, Y Huang, K Wu, L Yun, J Guan, Q Yuan, X Liao, ... Synthetic and systems biotechnology 9 (3), 494-502, 2024 | 5 | 2024 |
| Insight into the phylogeny and metabolic divergence of Monascus species (M. pilosus, M. ruber, and M. purpureus) at the genome level Z Zhang, M Cui, P Chen, J Li, Z Mao, Y Mao, Z Li, Q Guo, C Wang, X Liao, ... Frontiers in Microbiology 14, 1199144, 2023 | 4 | 2023 |
| Metabolomics Analysis Coupled with Weighted Gene Co-Expression Network Analysis Unravels the Associations of Tricarboxylic Acid Cycle-Intermediates with Edible Pigments … H Zhang, H Liu, L Shu, H Xu, Y Cheng, Z Mao, B Liu, X Liao, D Huang Foods 11 (14), 2168, 2022 | 4 | 2022 |
